View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6413_low_16 (Length: 269)
Name: NF6413_low_16
Description: NF6413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6413_low_16 |
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Alignment Details
Target: chr3 (Bit Score: 98; Significance: 2e-48; HSPs: 10)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 98; E-Value: 2e-48
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 47001865 - 47001982
Alignment:
| Q |
9 |
ggacatcatcaggtgagagaataacattgatggtgatatctaaagttgcaagaataaatttagcttcgcgactgtttttgcaatcgacaaaaacagtgta |
108 |
Q |
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| T |
47001865 |
ggacatcaacaggtgagagaataacattgacggtgatatctaaagttgcaagaataaatttagctcctcgactgtttttgcaatcgacaaaaacagtgta |
47001964 |
T |
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| Q |
109 |
agaatgaggaccttcaga |
126 |
Q |
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| T |
47001965 |
agaatgaggatcttcaga |
47001982 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 20 - 123
Target Start/End: Original strand, 46995936 - 46996039
Alignment:
| Q |
20 |
ggtgagagaataacattgatggtgatatctaaagttgcaagaataaatttagcttcgcgactgtttttgcaatcgacaaaaacagtgtaagaatgaggac |
119 |
Q |
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| T |
46995936 |
ggtgagagaatatcattgatggtaatatctaaagttgcatgaataaatttagctccgagactgtttttgcaatcgacaaaaacagtgtaagaatgaggat |
46996035 |
T |
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| Q |
120 |
cttc |
123 |
Q |
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|||| |
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| T |
46996036 |
cttc |
46996039 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 80; E-Value: 1e-37
Query Start/End: Original strand, 11 - 126
Target Start/End: Original strand, 46998175 - 46998290
Alignment:
| Q |
11 |
acatcatcaggtgagagaataacattgatggtgatatctaaagttgcaagaataaatttagcttcgcgactgtttttgcaatcgacaaaaacagtgtaag |
110 |
Q |
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| T |
46998175 |
acatcaacaggtgagagaatatcattgatggtgatatctaaagttgcatgaataaatttagctccgagactgtttttgcaatcaacaaaaacagtgtaaa |
46998274 |
T |
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| Q |
111 |
aatgaggaccttcaga |
126 |
Q |
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| T |
46998275 |
aatgagggtcttcaga |
46998290 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 79; E-Value: 5e-37
Query Start/End: Original strand, 125 - 264
Target Start/End: Original strand, 46981185 - 46981330
Alignment:
| Q |
125 |
gaaaatagtgtaagaatgaggatcttcagatttttgagtaacaagaagacctgagaggggatggaaatggaaaagtgtgagggaaagggagt------gt |
218 |
Q |
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||||| ||||||||||| ||||||||| ||||||| |||||||||| ||||||||||||||| |||||||||||| |||||||||||||||| || |
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| T |
46981185 |
gaaaacagtgtaagaatcaggatcttcggattttttagtaacaagacgacctgagaggggatagaaatggaaaagcgtgagggaaagggagtgtttcagt |
46981284 |
T |
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| Q |
219 |
ttttccatcagattctcaatgaaatgttgttggtttagtgatgatg |
264 |
Q |
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| T |
46981285 |
ttctccaccaggttctctatgaaatgttgttggtttagtgatgatg |
46981330 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 78; E-Value: 2e-36
Query Start/End: Original strand, 126 - 262
Target Start/End: Original strand, 46996014 - 46996144
Alignment:
| Q |
126 |
aaaatagtgtaagaatgaggatcttcagatttttgagtaacaagaagacctgagaggggatggaaatggaaaagtgtgagggaaagggagtgtttttcca |
225 |
Q |
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| T |
46996014 |
aaaacagtgtaagaatgaggatcttcggattttttagtaacaagacgacctgagaggggatagaaatggaaaagtgtgagggaaagggagtgtt------ |
46996107 |
T |
|
| Q |
226 |
tcagattctcaatgaaatgttgttggtttagtgatga |
262 |
Q |
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| || || ||||||||||| ||||||||||||||||| |
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| T |
46996108 |
tgagtttgtcaatgaaatgctgttggtttagtgatga |
46996144 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #6
Raw Score: 74; E-Value: 5e-34
Query Start/End: Original strand, 9 - 126
Target Start/End: Original strand, 46975110 - 46975227
Alignment:
| Q |
9 |
ggacatcatcaggtgagagaataacattgatggtgatatctaaagttgcaagaataaatttagcttcgcgactgtttttgcaatcgacaaaaacagtgta |
108 |
Q |
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|||||||| | |||||||||||| |||| ||||||||||||||||||||| |||||||| ||||| ||||||||||||||||||| || ||||||||||| |
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| T |
46975110 |
ggacatcaactggtgagagaatatcatttatggtgatatctaaagttgcatgaataaatctagctccgcgactgtttttgcaatcaacgaaaacagtgta |
46975209 |
T |
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| Q |
109 |
agaatgaggaccttcaga |
126 |
Q |
| |
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||||||||| ||||||| |
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| T |
46975210 |
agaatgagggtcttcaga |
46975227 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #7
Raw Score: 71; E-Value: 3e-32
Query Start/End: Original strand, 126 - 220
Target Start/End: Original strand, 46998262 - 46998356
Alignment:
| Q |
126 |
aaaatagtgtaagaatgaggatcttcagatttttgagtaacaagaagacctgagaggggatggaaatggaaaagtgtgagggaaagggagtgttt |
220 |
Q |
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|||| ||||||| ||||||| ||||||||||||| |||||||||| | ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
46998262 |
aaaacagtgtaaaaatgagggtcttcagattttttagtaacaagacggcctgagaggggatggaaatggaaaagtgtgagggaaagggagtgttt |
46998356 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #8
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 33 - 123
Target Start/End: Original strand, 46981121 - 46981211
Alignment:
| Q |
33 |
cattgatggtgatatctaaagttgcaagaataaatttagcttcgcgactgtttttgcaatcgacaaaaacagtgtaagaatgaggaccttc |
123 |
Q |
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|||| ||||||||||||||||||||| |||||||||||||| || ||||||||||||||||||| |||||||||||||||| |||| |||| |
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| T |
46981121 |
catttatggtgatatctaaagttgcatgaataaatttagctccgggactgtttttgcaatcgacgaaaacagtgtaagaatcaggatcttc |
46981211 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #9
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 125 - 265
Target Start/End: Original strand, 46975198 - 46975344
Alignment:
| Q |
125 |
gaaaatagtgtaagaatgaggatcttcagatttttgagtaacaagaagacctgagaggggatggaaatggaaaagtgtgagggaaagggagt------gt |
218 |
Q |
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||||| ||||||||||||||| ||||||||||||| |||||||||| |||| || ||||||| |||| ||||||||||| ||||| |||| || |
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| T |
46975198 |
gaaaacagtgtaagaatgagggtcttcagattttttagtaacaagacgaccagacaggggataataatgaaaaagtgtgagagaaagagagtgtttgagt |
46975297 |
T |
|
| Q |
219 |
ttttccatcagattctcaatgaaatgttgttggtttagtgatgatgt |
265 |
Q |
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|| |||| || ||||||||||| ||||||||||||||||||||||| |
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| T |
46975298 |
ttgtccactaggttctcaatgaagtgttgttggtttagtgatgatgt |
46975344 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #10
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 126 - 177
Target Start/End: Original strand, 47001954 - 47002005
Alignment:
| Q |
126 |
aaaatagtgtaagaatgaggatcttcagatttttgagtaacaagaagacctg |
177 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
47001954 |
aaaacagtgtaagaatgaggatcttcagatttttgagtaacaagaagacctg |
47002005 |
T |
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