View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6413_low_21 (Length: 251)
Name: NF6413_low_21
Description: NF6413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6413_low_21 |
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| [»] chr7 (1 HSPs) |
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| [»] scaffold0010 (1 HSPs) |
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| [»] chr2 (2 HSPs) |
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| [»] chr6 (1 HSPs) |
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| [»] scaffold1956 (1 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 207; Significance: 1e-113; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 207; E-Value: 1e-113
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 781235 - 781001
Alignment:
| Q |
18 |
aaaactctattatacgagaagaagtaggaagaaatagaagactactcaattccaagttaatagaagaaacaaagatgagtagaagcacaagataattaag |
117 |
Q |
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| T |
781235 |
aaaactctattatacgagaagaagtaggatgaaatagaagactactcgattccaagttaatagaagaaacaaagatgagtagaagcacaagataattaag |
781136 |
T |
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| Q |
118 |
taaaaaggttatttcaaatctagtaggagaatgaaaaagaat-ggtgaagagtagaaaatgtcagcaagttaaagaagacaaagagtacttagttcatat |
216 |
Q |
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|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
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| T |
781135 |
taaaaaggttatttcaaatctagtaggagaatgaaaaagaatgggtgaagagtagaaaatgtcagcaagttaaagaagacaaagagtacatagttcatat |
781036 |
T |
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| Q |
217 |
taaatatgattgcttacgatttaagactcctttat |
251 |
Q |
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| T |
781035 |
taaatatgattgcttacgttttaagactcatttat |
781001 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0010 (Bit Score: 126; Significance: 4e-65; HSPs: 1)
Name: scaffold0010
Description:
Target: scaffold0010; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 33 - 251
Target Start/End: Complemental strand, 125780 - 125560
Alignment:
| Q |
33 |
gagaagaagtaggaagaaatagaagactactcaattccaagttaatagaagaaacaaagatgagtagaagcacaagataattaagtaaaaaggttatttc |
132 |
Q |
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| T |
125780 |
gagaagaagtggaatgaaatagaagactaatcagttccaatttaatataagaaacaaagatgagtagaagcacaagataattaagtaaaaaggttatttc |
125681 |
T |
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| Q |
133 |
aaatctagtaggagaatgaaaaagaatgg--tgaagagtagaaaatgtcagcaagttaaagaagacaaagagtacttagttcatattaaatatgattgct |
230 |
Q |
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|||| ||||| ||||||||||||||||| |||||||||| |||| | || |||||| ||||| |||||||||||| ||| ||||||| | ||||||| |
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| T |
125680 |
gaatcaagtagaagaatgaaaaagaatgggatgaagagtagtaaatatgggcgagttaatgaagataaagagtacttaattcctattaaaaaggattgct |
125581 |
T |
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| Q |
231 |
tacgatttaagactcctttat |
251 |
Q |
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| T |
125580 |
tacgatttaagactcctttat |
125560 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 92; Significance: 9e-45; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 92; E-Value: 9e-45
Query Start/End: Original strand, 30 - 251
Target Start/End: Complemental strand, 24000044 - 23999826
Alignment:
| Q |
30 |
tacgagaagaagtaggaagaaatagaagactactcaattccaagttaatagaagaaacaaagatgagtagaagcacaagataattaagtaaaaaggttat |
129 |
Q |
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||||||||||||||||| ||||||||||| | ||||||||| ||| |||||||||||||||||| ||||||||||| ||||||||||||||| |||| |
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| T |
24000044 |
tacgagaagaagtaggatgaaatagaagatt---caattccaatttagtagaagaaacaaagatgaatagaagcacaacataattaagtaaaaatattat |
23999948 |
T |
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| Q |
130 |
ttcaaatctagtaggagaatgaaaaagaatgg--tgaagagtagaaaatgtcagcaagttaaagaagacaaagagtacttagttcatattaaatatgatt |
227 |
Q |
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| ||||||| |||||| ||||||||||||| |||||||| |||||| | ||||||| ||||||||||||| |||||| |||||||||||||| |
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| T |
23999947 |
tatgaatctagcaggagattgaaaaagaatgggatgaagagtggaaaatatggatgagttaaaaaagacaaagagtatttagtttctattaaatatgatt |
23999848 |
T |
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| Q |
228 |
gcttacgatttaagactcctttat |
251 |
Q |
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| ||||||||||||||||||||| |
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| T |
23999847 |
g--tacgatttaagactcctttat |
23999826 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 95 - 154
Target Start/End: Complemental strand, 20854888 - 20854829
Alignment:
| Q |
95 |
agtagaagcacaagataattaagtaaaaaggttatttcaaatctagtaggagaatgaaaa |
154 |
Q |
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||||| || |||||||||| ||||| |||||||||||||||||| || ||||||||||| |
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| T |
20854888 |
agtagtagtacaagataatcaagtacgaaggttatttcaaatctaataagagaatgaaaa |
20854829 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 83; Significance: 2e-39; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 83; E-Value: 2e-39
Query Start/End: Original strand, 97 - 251
Target Start/End: Original strand, 24068659 - 24068816
Alignment:
| Q |
97 |
tagaagcacaaga-taattaagtaaaaaggttatttcaaatctagtaggagaatgaaaaagaatgg--tgaagagtagaaaatgtcagcaagttaaagaa |
193 |
Q |
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|||||| |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||||| | | | |||||||| |
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| T |
24068659 |
tagaagaacaagaataattaagtaaaaaggttatttcaaatctagtaggagaatgaaaaagaatgggatgaagagtataaaatatgggtgaattaaagaa |
24068758 |
T |
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| Q |
194 |
gacaaagagtacttagttcatattaaatatgattgcttacgatttaagactcctttat |
251 |
Q |
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| T |
24068759 |
gacaaagagtatttagttcctattgaatatgattgcataatatttaagactcctttat |
24068816 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 40; Significance: 0.00000000000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 75 - 154
Target Start/End: Original strand, 24117043 - 24117121
Alignment:
| Q |
75 |
taatagaagaaacaaagatgagtagaagcacaagataattaagtaaaaaggttatttcaaatctagtaggagaatgaaaa |
154 |
Q |
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| T |
24117043 |
taatagaagaaagaaa-ataattaaaagcacaagataatcaagtaagaaggttatttcaaatcaagtaagagaatgaaaa |
24117121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 100 - 154
Target Start/End: Original strand, 31815477 - 31815531
Alignment:
| Q |
100 |
aagcacaagataattaagtaaaaaggttatttcaaatctagtaggagaatgaaaa |
154 |
Q |
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| T |
31815477 |
aagcacaatataatcaagtaagaaggttatttcaaatctaataagagaatgaaaa |
31815531 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 75 - 154
Target Start/End: Original strand, 30509047 - 30509125
Alignment:
| Q |
75 |
taatagaagaaacaaagatgagtagaagcacaagataattaagtaaaaaggttatttcaaatctagtaggagaatgaaaa |
154 |
Q |
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|||||||||||| ||| | || || ||||| ||| |||| || ||| ||||||||||||||||||||| ||||||||||| |
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| T |
30509047 |
taatagaagaaagaaa-aggattaaaagcataagttaatcaaataagaaggttatttcaaatctagtaagagaatgaaaa |
30509125 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold1956 (Bit Score: 29; Significance: 0.0000003; HSPs: 1)
Name: scaffold1956
Description:
Target: scaffold1956; HSP #1
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 195 - 251
Target Start/End: Complemental strand, 348 - 293
Alignment:
| Q |
195 |
acaaagagtacttagttcatattaaatatgattgcttacgatttaagactcctttat |
251 |
Q |
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|||||||||| |||||||| ||| ||||||||||| ||| | ||||||||||||||| |
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| T |
348 |
acaaagagtagttagttcacattgaatatgattgcatac-aattaagactcctttat |
293 |
T |
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