View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6413_low_22 (Length: 249)
Name: NF6413_low_22
Description: NF6413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6413_low_22 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 241
Target Start/End: Complemental strand, 27430267 - 27430027
Alignment:
| Q |
1 |
ttcccaacaccagccaaacaagattgcccttttctctcatcttcttatccatcaacatcatcatcatcagtgaaaagggaggattgcaaggaagagattg |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27430267 |
ttcccaacaccagccaaacaagattgcccttttctctcatcttcttatccatcaacatcatcatcatcagtgaaaagggaggattgcaaggaagagattg |
27430168 |
T |
|
| Q |
101 |
ttcatcctcctccttcttcaaatgattacctctctggactaacttttgatgatccagaaaaggatgtcacactatcatcaacacttgattctcatgatca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27430167 |
ttcatcctcctccttcttcaaatgattacctctctggactaacttttgatgatccagaaaaggatgtcacactatcatcaacacttgattctcatgatca |
27430068 |
T |
|
| Q |
201 |
tttaggtgtcaacattcctgatatcatgtatgatgatgtcc |
241 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
27430067 |
tttaggtgtcaacattcctgatatcatgtatgatgatgtcc |
27430027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 67 - 241
Target Start/End: Complemental strand, 27447478 - 27447304
Alignment:
| Q |
67 |
tcagtgaaaagggaggattgcaaggaagagattgttcatcctcctccttcttcaaatgattacctctctggactaacttttgatgatccagaaaaggatg |
166 |
Q |
| |
|
|||||||||| |||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
27447478 |
tcagtgaaaaaggaggagtgcaaggaagaggttgttcatcctcctccttcttcaaatgattacctctctggactcacttttgatgatccagaaaaggatg |
27447379 |
T |
|
| Q |
167 |
tcacactatcatcaacacttgattctcatgatcatttaggtgtcaacattcctgatatcatgtatgatgatgtcc |
241 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||| | ||| |||||||||||||||||||||||| |
|
|
| T |
27447378 |
tcacactatcatcaacacttgattctcatgatcacttaggtgtccatatttctgatatcatgtatgatgatgtcc |
27447304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 1 - 39
Target Start/End: Complemental strand, 27447514 - 27447476
Alignment:
| Q |
1 |
ttcccaacaccagccaaacaagattgcccttttctctca |
39 |
Q |
| |
|
||||||||||||||||||||||| || |||||||||||| |
|
|
| T |
27447514 |
ttcccaacaccagccaaacaagactgtccttttctctca |
27447476 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University