View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6413_low_24 (Length: 240)

Name: NF6413_low_24
Description: NF6413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6413_low_24
NF6413_low_24
[»] scaffold0576 (2 HSPs)
scaffold0576 (106-231)||(8258-8383)
scaffold0576 (1-129)||(8119-8247)
[»] chr6 (2 HSPs)
chr6 (106-231)||(15363487-15363612)
chr6 (1-129)||(15363348-15363476)
[»] chr3 (3 HSPs)
chr3 (106-231)||(7405957-7406082)
chr3 (1-129)||(7406093-7406221)
chr3 (1-109)||(1655897-1656005)
[»] chr7 (3 HSPs)
chr7 (106-231)||(4683767-4683892)
chr7 (1-109)||(4684596-4684704)
chr7 (170-208)||(24712070-24712108)
[»] chr8 (4 HSPs)
chr8 (106-222)||(25639937-25640053)
chr8 (1-109)||(17303702-17303810)
chr8 (9-109)||(17253349-17253447)
chr8 (55-106)||(17242420-17242471)
[»] chr2 (1 HSPs)
chr2 (1-109)||(31341091-31341199)


Alignment Details
Target: scaffold0576 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: scaffold0576
Description:

Target: scaffold0576; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 106 - 231
Target Start/End: Original strand, 8258 - 8383
Alignment:
Q  106 atgtctactgctgagaagaaatttggatccaatatatgaagtgaattgaaaattctgaacatagatatctcagcatctaccattccaagagtaacaccac 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8258 atgtctactgctgagaagaaatttggatccaatatatgaagtgaattgaaaattctgaacatagatatctcagcatctaccattccaagagtaacaccac 8357  T
Q  206 aagtttcctcaattctaatgatgatg 231  Q
    ||||||||||||||||||||||||||    
T  8358 aagtttcctcaattctaatgatgatg 8383  T

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Target: scaffold0576; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 8119 - 8247
Alignment:
Q  1 tttaataattctaaacaatgacacattacaatgtcaaaggacacctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaaggg 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  8119 tttaataattctaaacaatgacacattacaatgccaaaggacacctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaaggg 8218  T
Q  101 tctgcatgtctactgctgagaagaaattt 129  Q
    |||||||||||||||||||||||||||||    
T  8219 tctgcatgtctactgctgagaagaaattt 8247  T

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Target: chr6 (Bit Score: 126; Significance: 4e-65; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 106 - 231
Target Start/End: Original strand, 15363487 - 15363612
Alignment:
Q  106 atgtctactgctgagaagaaatttggatccaatatatgaagtgaattgaaaattctgaacatagatatctcagcatctaccattccaagagtaacaccac 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15363487 atgtctactgctgagaagaaatttggatccaatatatgaagtgaattgaaaattctgaacatagatatctcagcatctaccattccaagagtaacaccac 15363586  T
Q  206 aagtttcctcaattctaatgatgatg 231  Q
    ||||||||||||||||||||||||||    
T  15363587 aagtttcctcaattctaatgatgatg 15363612  T

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Target: chr6; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 129
Target Start/End: Original strand, 15363348 - 15363476
Alignment:
Q  1 tttaataattctaaacaatgacacattacaatgtcaaaggacacctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaaggg 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15363348 tttaataattctaaacaatgacacattacaatgccaaaggacacctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaaggg 15363447  T
Q  101 tctgcatgtctactgctgagaagaaattt 129  Q
    |||||||||||||||||||||||||||||    
T  15363448 tctgcatgtctactgctgagaagaaattt 15363476  T

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Target: chr3 (Bit Score: 126; Significance: 4e-65; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 126; E-Value: 4e-65
Query Start/End: Original strand, 106 - 231
Target Start/End: Complemental strand, 7406082 - 7405957
Alignment:
Q  106 atgtctactgctgagaagaaatttggatccaatatatgaagtgaattgaaaattctgaacatagatatctcagcatctaccattccaagagtaacaccac 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7406082 atgtctactgctgagaagaaatttggatccaatatatgaagtgaattgaaaattctgaacatagatatctcagcatctaccattccaagagtaacaccac 7405983  T
Q  206 aagtttcctcaattctaatgatgatg 231  Q
    ||||||||||||||||||||||||||    
T  7405982 aagtttcctcaattctaatgatgatg 7405957  T

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Target: chr3; HSP #2
Raw Score: 125; E-Value: 2e-64
Query Start/End: Original strand, 1 - 129
Target Start/End: Complemental strand, 7406221 - 7406093
Alignment:
Q  1 tttaataattctaaacaatgacacattacaatgtcaaaggacacctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaaggg 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  7406221 tttaataattctaaacaatgacacattacaatgccaaaggacacctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaaggg 7406122  T
Q  101 tctgcatgtctactgctgagaagaaattt 129  Q
    |||||||||||||||||||||||||||||    
T  7406121 tctgcatgtctactgctgagaagaaattt 7406093  T

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Target: chr3; HSP #3
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 1655897 - 1656005
Alignment:
Q  1 tttaataattctaaacaatgacacattacaatgtcaaaggacacctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaaggg 100  Q
    ||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  1655897 tttaataattctaaataatgacacattacaatgccaaaggacacctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaaggg 1655996  T
Q  101 tctgcatgt 109  Q
    |||||||||    
T  1655997 tctgcatgt 1656005  T

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Target: chr7 (Bit Score: 122; Significance: 1e-62; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 106 - 231
Target Start/End: Complemental strand, 4683892 - 4683767
Alignment:
Q  106 atgtctactgctgagaagaaatttggatccaatatatgaagtgaattgaaaattctgaacatagatatctcagcatctaccattccaagagtaacaccac 205  Q
    ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4683892 atgtctattgctgagaagaaatttggatccaatatatgaagtgaattgaaaattctgaacatagatatctcagcatctaccattccaagagtaacaccac 4683793  T
Q  206 aagtttcctcaattctaatgatgatg 231  Q
    ||||||||||||||||||||||||||    
T  4683792 aagtttcctcaattctaatgatgatg 4683767  T

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Target: chr7; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 4684704 - 4684596
Alignment:
Q  1 tttaataattctaaacaatgacacattacaatgtcaaaggacacctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaaggg 100  Q
    |||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  4684704 tttaataattctaaacaatgacacattagaatgccaaaggacacctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaaggg 4684605  T
Q  101 tctgcatgt 109  Q
    |||||||||    
T  4684604 tctgcatgt 4684596  T

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Target: chr7; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 170 - 208
Target Start/End: Complemental strand, 24712108 - 24712070
Alignment:
Q  170 atatctcagcatctaccattccaagagtaacaccacaag 208  Q
    |||| |||||||||||||||| |||||||||||||||||    
T  24712108 atatttcagcatctaccattctaagagtaacaccacaag 24712070  T

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Target: chr8 (Bit Score: 109; Significance: 6e-55; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 109; E-Value: 6e-55
Query Start/End: Original strand, 106 - 222
Target Start/End: Original strand, 25639937 - 25640053
Alignment:
Q  106 atgtctactgctgagaagaaatttggatccaatatatgaagtgaattgaaaattctgaacatagatatctcagcatctaccattccaagagtaacaccac 205  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||    
T  25639937 atgtctactgctgagaagaaatttggatccaatatatgaagtgaattgaaaattctgaacatatatatctcagcatctaccattccaagagcaacaccac 25640036  T
Q  206 aagtttcctcaattcta 222  Q
    |||||||||||||||||    
T  25640037 aagtttcctcaattcta 25640053  T

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Target: chr8; HSP #2
Raw Score: 101; E-Value: 3e-50
Query Start/End: Original strand, 1 - 109
Target Start/End: Original strand, 17303702 - 17303810
Alignment:
Q  1 tttaataattctaaacaatgacacattacaatgtcaaaggacacctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaaggg 100  Q
    ||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||    
T  17303702 tttaataattctaaacaatgacacattacaatgccaaaggacacctattttccagaataagtacattcaaggcaagaaaatgaaccgtaaaatccaaggg 17303801  T
Q  101 tctgcatgt 109  Q
    |||||||||    
T  17303802 tctgcatgt 17303810  T

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Target: chr8; HSP #3
Raw Score: 66; E-Value: 3e-29
Query Start/End: Original strand, 9 - 109
Target Start/End: Original strand, 17253349 - 17253447
Alignment:
Q  9 ttctaaacaatgacacattacaatgtcaaaggacacctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtctgcatg 108  Q
    ||||||||| || ||||| ||||||||||||||||||||||  |||||||||||||||||||||||||||||||| | || |||||||||||||||||||    
T  17253349 ttctaaacattggcacatcacaatgtcaaaggacacctatt--ccagaacaagtacattcaaggcaagaaaatgaccagtgaaatccaagggtctgcatg 17253446  T

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Target: chr8; HSP #4
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 55 - 106
Target Start/End: Original strand, 17242420 - 17242471
Alignment:
Q  55 gaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaagggtctgca 106  Q
    ||||||||||||||||||||||||||||| | || |||||||||||||||||    
T  17242420 gaacaagtacattcaaggcaagaaaatgaccggtgaaatccaagggtctgca 17242471  T

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Target: chr2 (Bit Score: 97; Significance: 8e-48; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 97; E-Value: 8e-48
Query Start/End: Original strand, 1 - 109
Target Start/End: Complemental strand, 31341199 - 31341091
Alignment:
Q  1 tttaataattctaaacaatgacacattacaatgtcaaaggacacctattttccagaacaagtacattcaaggcaagaaaatgaaccgtaaaatccaaggg 100  Q
    ||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||    
T  31341199 tttaataattctaaacaatgacacattacaatgccaaaggacacctattttccagaacaagtgcattcaaggcaagaaaatgaaccgtaaaatccaaggg 31341100  T
Q  101 tctgcatgt 109  Q
    || ||||||    
T  31341099 tccgcatgt 31341091  T

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