View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6413_low_26 (Length: 235)

Name: NF6413_low_26
Description: NF6413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6413_low_26
NF6413_low_26
[»] chr4 (8 HSPs)
chr4 (1-226)||(15349276-15349501)
chr4 (1-226)||(14687204-14687435)
chr4 (1-222)||(42711207-42711434)
chr4 (1-105)||(11918130-11918233)
chr4 (1-115)||(45240289-45240404)
chr4 (1-115)||(11498045-11498159)
chr4 (12-116)||(10629417-10629521)
chr4 (1-102)||(18290701-18290802)
[»] chr7 (13 HSPs)
chr7 (1-226)||(540191-540416)
chr7 (1-226)||(16327199-16327430)
chr7 (1-226)||(9581453-9581684)
chr7 (1-226)||(9729305-9729536)
chr7 (3-226)||(4311279-4311507)
chr7 (63-226)||(14223144-14223313)
chr7 (1-226)||(8783521-8783752)
chr7 (2-106)||(4462140-4462244)
chr7 (12-116)||(13741088-13741192)
chr7 (12-116)||(23513736-23513840)
chr7 (1-112)||(5395811-5395922)
chr7 (1-116)||(12565670-12565785)
chr7 (1-119)||(10439770-10439888)
[»] chr1 (3 HSPs)
chr1 (1-226)||(27045424-27045649)
chr1 (12-110)||(22626469-22626567)
chr1 (12-115)||(21785883-21785986)
[»] chr6 (7 HSPs)
chr6 (1-226)||(22062943-22063168)
chr6 (44-226)||(19587034-19587222)
chr6 (1-116)||(18189001-18189116)
chr6 (1-132)||(23519183-23519314)
chr6 (1-105)||(17818194-17818298)
chr6 (9-116)||(18852688-18852794)
chr6 (198-226)||(29685084-29685112)
[»] chr3 (9 HSPs)
chr3 (1-226)||(6813419-6813644)
chr3 (1-229)||(12777936-12778170)
chr3 (1-226)||(15024254-15024485)
chr3 (12-115)||(20559709-20559812)
chr3 (12-115)||(20562017-20562120)
chr3 (12-115)||(20564325-20564428)
chr3 (12-116)||(13090247-13090351)
chr3 (12-116)||(9362397-9362501)
chr3 (12-116)||(13096380-13096484)
[»] scaffold0090 (1 HSPs)
scaffold0090 (1-226)||(29312-29543)
[»] chr8 (4 HSPs)
chr8 (1-226)||(20000852-20001080)
chr8 (12-119)||(21855216-21855323)
chr8 (12-115)||(17619412-17619515)
chr8 (12-115)||(20040512-20040615)
[»] scaffold0035 (1 HSPs)
scaffold0035 (1-226)||(51985-52216)
[»] chr5 (7 HSPs)
chr5 (1-226)||(23712139-23712370)
chr5 (1-110)||(20446277-20446386)
chr5 (1-116)||(21282342-21282458)
chr5 (1-102)||(18487495-18487596)
chr5 (12-99)||(24218516-24218603)
chr5 (12-105)||(23602080-23602173)
chr5 (12-116)||(24939200-24939304)
[»] scaffold0485 (1 HSPs)
scaffold0485 (1-226)||(11336-11568)
[»] chr2 (2 HSPs)
chr2 (1-226)||(25339538-25339769)
chr2 (1-116)||(24500997-24501112)
[»] scaffold0220 (1 HSPs)
scaffold0220 (1-116)||(11745-11860)
[»] scaffold0026 (1 HSPs)
scaffold0026 (12-116)||(17034-17138)
[»] scaffold0222 (1 HSPs)
scaffold0222 (1-102)||(18509-18610)
[»] scaffold0566 (1 HSPs)
scaffold0566 (1-115)||(1275-1389)
[»] scaffold0113 (1 HSPs)
scaffold0113 (12-116)||(38073-38177)


Alignment Details
Target: chr4 (Bit Score: 222; Significance: 1e-122; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 15349276 - 15349501
Alignment:
Q  1 cataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  15349276 cataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaatt 15349375  T
Q  101 gtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttgatcccttgattcacactcacccca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  15349376 gtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttgatcccttgattcatactcacccca 15349475  T
Q  201 aacttcttagcaataaaagtgatgat 226  Q
    ||||||||||||||||||||||||||    
T  15349476 aacttcttagcaataaaagtgatgat 15349501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 181; E-Value: 6e-98
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 14687204 - 14687435
Alignment:
Q  1 cataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaatt 100  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |||||||||| ||||||||||||    
T  14687204 cataaagcaaattttccaccgcctccggattagtaatgtccgaattaggtagcataatcaaacaattagctctaataattctccatttatattggtaatt 14687303  T
Q  101 gtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcctcttgatcccttgattcacactc 194  Q
    ||||||||||||||||||| ||||||||||||||||      |||||| |||||||||||||||||||| ||||||||||||||||||||||||||||||    
T  14687304 gtgagtagggtcatgggttctaaggaatgacaaagtagtgagagtatataagtttagataatagttctcctctatcctcttgatcccttgattcacactc 14687403  T
Q  195 accccaaacttcttagcaataaaagtgatgat 226  Q
    ||||||||||||||||||||||||||||||||    
T  14687404 accccaaacttcttagcaataaaagtgatgat 14687435  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 42711207 - 42711434
Alignment:
Q  1 cataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||    
T  42711207 cataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagttctaataattctccattcatattggtaatt 42711306  T
Q  101 gtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcctcttgatcccttgattcacactc 194  Q
     |||||| ||||||||||| ||||||| ||||||||      |||||| |||||| ||||||| || ||||||||||||||||||| |||||||||||||    
T  42711307 atgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttggataataattttcatctatcctcttgatcctttgattcacactc 42711406  T
Q  195 accccaaacttcttagcaataaaagtga 222  Q
    |||| |||| ||||||||||||||||||    
T  42711407 accctaaacctcttagcaataaaagtga 42711434  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 105
Target Start/End: Original strand, 11918130 - 11918233
Alignment:
Q  1 cataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaatt 100  Q
    |||||| ||| ||||||||||||| ||| ||||| ||||||| ||||||||||||||||||| ||||||| ||| ||| | |||| ||||||||||||||    
T  11918130 cataaaacaatttttccaccaccttcgggttagttatgtccggattaggtagaataatcaaa-aattagccctattgactttccactcatattggtaatt 11918228  T
Q  101 gtgag 105  Q
    |||||    
T  11918229 gtgag 11918233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 45240289 - 45240404
Alignment:
Q  1 cataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaa-ttagctctaatgattctccattcatattggtaat 99  Q
    |||||| ||| ||||| |||||||||||||||||||| | |||||| |||||||||||||| ||| |||||  || ||| |||||| |||||||||||||    
T  45240289 cataaaccaagttttctaccacctccggattagtaatattcgaatttggtagaataatcaagcaatttagcgttattgactctccactcatattggtaat 45240388  T
Q  100 tgtgagtagggtcatg 115  Q
    |||||| |||| ||||    
T  45240389 tgtgagaagggccatg 45240404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 115
Target Start/End: Original strand, 11498045 - 11498159
Alignment:
Q  1 cataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaatt 100  Q
    |||||| ||| ||||| |||||||||||||||||||| |  |||||||||||||||||||| |||||| |   | ||| |||||| ||||||||||||||    
T  11498045 cataaaccaagttttctaccacctccggattagtaatatttgaattaggtagaataatcaagcaattaacataattgactctccactcatattggtaatt 11498144  T
Q  101 gtgagtagggtcatg 115  Q
    || || |||||||||    
T  11498145 gttagaagggtcatg 11498159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 10629521 - 10629417
Alignment:
Q  12 ttttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaattgtgagtagggt 111  Q
    ||||| ||| ||| |||||||||||| || ||||||||||||||||||||  |||||||  || ||| |||||| ||||||||| ||||||||| ||||     
T  10629521 ttttctaccgccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactctccactcatattgggaattgtgagaagggc 10629422  T
Q  112 catgg 116  Q
    |||||    
T  10629421 catgg 10629417  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 18290802 - 18290701
Alignment:
Q  1 cataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaatt 100  Q
    |||||| ||| ||||| | |||||||||||||||||| || ||||||||||||||||||||  |||| ||  || ||| | |||| ||||||||||||||    
T  18290802 cataaaccaagttttctatcacctccggattagtaatatctgaattaggtagaataatcaataaatttgcattattgaatttccactcatattggtaatt 18290703  T
Q  101 gt 102  Q
    ||    
T  18290702 gt 18290701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 218; Significance: 1e-120; HSPs: 13)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 540191 - 540416
Alignment:
Q  1 cataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaatt 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||    
T  540191 cataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctttaatgattctcctttcatattggtaatt 540290  T
Q  101 gtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttgatcccttgattcacactcacccca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  540291 gtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttgatcccttgattcacactcacccca 540390  T
Q  201 aacttcttagcaataaaagtgatgat 226  Q
    ||||||||||||||||||||||||||    
T  540391 aacttcttagcaataaaagtgatgat 540416  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 16327199 - 16327430
Alignment:
Q  1 cataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  16327199 cataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaatagtcaaacaattagctctaataattctccattcatattggtaatt 16327298  T
Q  101 gtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcctcttgatcccttgattcacactc 194  Q
    ||||||||||||||||||| ||||||| ||||||||      |||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  16327299 gtgagtagggtcatgggttataaggaaggacaaagtagtaagagtatataagtttagataatagttttcctctatcctcttgatcccttgattcacactc 16327398  T
Q  195 accccaaacttcttagcaataaaagtgatgat 226  Q
    |||| |||| ||||||||||||||||||||||    
T  16327399 accctaaacctcttagcaataaaagtgatgat 16327430  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 9581684 - 9581453
Alignment:
Q  1 cataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaatt 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||| || |||||||||||||| |||||    
T  9581684 cataaagcaaattttccaccacctccagattagtaatgtccgaattaggtagaataatcaaacaattagttctaataatcctccattcatattgataatt 9581585  T
Q  101 gtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcctcttgatcccttgattcacactc 194  Q
    ||||||| ||||||||||| ||||||| ||||||||      |||||| |||||| ||||||| || |||||||||||||||||||||||||||||||||    
T  9581584 gtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttggataataattttcatctatcctcttgatcccttgattcacactc 9581485  T
Q  195 accccaaacttcttagcaataaaagtgatgat 226  Q
    |||| |||| ||||||||||||||||||||||    
T  9581484 accctaaacctcttagcaataaaagtgatgat 9581453  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 9729536 - 9729305
Alignment:
Q  1 cataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaatt 100  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||| || |||||||||||||| |||||    
T  9729536 cataaagcaaattttccaccacctccggattagtaatgtctgaattaggtagaataatcaaacaattagttctaataatcctccattcatattgataatt 9729437  T
Q  101 gtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcctcttgatcccttgattcacactc 194  Q
    ||||||| ||||||||||| ||||||| ||||||||      |||||| |||||| ||||||| || |||||||||||||||||||||||||||||||||    
T  9729436 gtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttggataataattttcatctatcctcttgatcccttgattcacactc 9729337  T
Q  195 accccaaacttcttagcaataaaagtgatgat 226  Q
    |||| |||| ||||||||||||||||||||||    
T  9729336 accctaaacctcttagcaataaaagtgatgat 9729305  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 3 - 226
Target Start/End: Complemental strand, 4311507 - 4311279
Alignment:
Q  3 taaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaattgt 102  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  4311507 taaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaataattctccattcatattggtaattgt 4311408  T
Q  103 gagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcctcttgatcccttgattcacactcac 196  Q
    |||||||| |||||||| |||| || ||||||||      |||||| |||| ||||||||||||| | ||||||||||||||| |||||||||||||| |    
T  4311407 gagtagggccatgggttctaagaaaggacaaagtagtgagagtatataagtctagataatagttcccctctatcctcttgatctcttgattcacactc-c 4311309  T
Q  197 cccaaacttcttagcaataaaagtgatgat 226  Q
    |||||||||| ||| |||||| ||||||||    
T  4311308 cccaaacttcctagaaataaaggtgatgat 4311279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 131; E-Value: 4e-68
Query Start/End: Original strand, 63 - 226
Target Start/End: Original strand, 14223144 - 14223313
Alignment:
Q  63 caattagctctaatgattctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagtagt------ataaaagtttagataat 156  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||      ||| |||||||||||||    
T  14223144 caattagctctaatgattctccattcatattggtaattgtgagtagggtcatgggctttaaggaatgacaaagtagtgagagtatataagtttagataat 14223243  T
Q  157 agttctcatctatcctcttgatcccttgattcacactcaccccaaacttcttagcaataaaagtgatgat 226  Q
    ||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14223244 agttctcctctttcctcttgatcccttgattcacactcaccccaaacttcttagcaataaaagtgatgat 14223313  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 129; E-Value: 7e-67
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 8783521 - 8783752
Alignment:
Q  1 cataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaatt 100  Q
    |||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||| ||||| || |||| ||||||| |||||||| ||||||    
T  8783521 cataaagcaaattttccaccacctccggattagttatgtccgaattagggagaataatcaaaaaattatctgtaataattctcctttcatatttgtaatt 8783620  T
Q  101 gtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcctcttgatcccttgattcacactc 194  Q
    |||||||||| |||||||| ||||||| | ||||||      |||||| |||| ||||||||||||| | ||||||| |||||||| |||||||||||||    
T  8783621 gtgagtagggccatgggttgtaaggaagggcaaagtagtgagagtatataagtctagataatagttcccctctatccccttgatccattgattcacactc 8783720  T
Q  195 accccaaacttcttagcaataaaagtgatgat 226  Q
    |||||||||||| |||||||||| ||||||||    
T  8783721 accccaaacttcctagcaataaaggtgatgat 8783752  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 2 - 106
Target Start/End: Original strand, 4462140 - 4462244
Alignment:
Q  2 ataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaattg 101  Q
    ||||||||||||||||||||||| ||| ||||| |||  || ||||||||||||||||||||||| ||||||||||||| || | |||||||||| ||||    
T  4462140 ataaagcaaattttccaccaccttcgggttagttatgaacggattaggtagaataatcaaacaatgagctctaatgattttctaatcatattggtcattg 4462239  T
Q  102 tgagt 106  Q
    |||||    
T  4462240 tgagt 4462244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 13741192 - 13741088
Alignment:
Q  12 ttttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaattgtgagtagggt 111  Q
    ||||| |||||||||| ||||||||||||||||||||||||||||||||| |||||| |  || ||| |||||| ||||||||||||||||||| ||||     
T  13741192 ttttctaccacctccgaattagtaatgtccgaattaggtagaataatcaagcaattatcattattgactctccactcatattggtaattgtgagaagggc 13741093  T
Q  112 catgg 116  Q
    |||||    
T  13741092 catgg 13741088  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 23513840 - 23513736
Alignment:
Q  12 ttttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaattgtgagtagggt 111  Q
    ||||| ||||||||||||||||||||||||||||||||||||||||||||  |||||||  || ||| |||||| |||||| |||||||||||| ||||     
T  23513840 ttttctaccacctccggattagtaatgtccgaattaggtagaataatcaagtaattagcattattgactctccactcatataggtaattgtgagaagggc 23513741  T
Q  112 catgg 116  Q
    |||||    
T  23513740 catgg 23513736  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 1 - 112
Target Start/End: Complemental strand, 5395922 - 5395811
Alignment:
Q  1 cataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaatt 100  Q
    |||||| ||| ||||| |||||||||||||||||||| || ||||||||||||||||||||  |||||||  || |||  ||||| |||| |||||||||    
T  5395922 cataaaccaagttttctaccacctccggattagtaatatctgaattaggtagaataatcaagaaattagcattattgacgctccactcattttggtaatt 5395823  T
Q  101 gtgagtagggtc 112  Q
    || || ||||||    
T  5395822 gttagaagggtc 5395811  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 12565785 - 12565670
Alignment:
Q  1 cataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaatt 100  Q
    |||||| ||| ||||| |||||||||| ||||||||| || |||||||||  |||||||||  |||||||  || ||| |||||| ||||||||||||||    
T  12565785 cataaaccaagttttctaccacctccgaattagtaatatctgaattaggttaaataatcaagaaattagcattattgactctccactcatattggtaatt 12565686  T
Q  101 gtgagtagggtcatgg 116  Q
    || || |||| |||||    
T  12565685 gttagaagggccatgg 12565670  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 1 - 119
Target Start/End: Original strand, 10439770 - 10439888
Alignment:
Q  1 cataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaatt 100  Q
    |||||| ||| ||||| ||||||| | | |||||||| || ||||||||||||||||||||  ||||| |  || ||| |||||| ||||||||||||||    
T  10439770 cataaaccaagttttctaccaccttcagcttagtaatatctgaattaggtagaataatcaagaaattatcattattgactctccactcatattggtaatt 10439869  T
Q  101 gtgagtagggtcatgggtt 119  Q
    ||||| ||||  |||||||    
T  10439870 gtgagaagggctatgggtt 10439888  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 218; Significance: 1e-120; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 218; E-Value: 1e-120
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 27045649 - 27045424
Alignment:
Q  1 cataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  27045649 cataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccatgcatattggtaatt 27045550  T
Q  101 gtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttgatcccttgattcacactcacccca 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  27045549 gtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttgatcccttgattcatactcacccca 27045450  T
Q  201 aacttcttagcaataaaagtgatgat 226  Q
    ||||||||||||||||||||||||||    
T  27045449 aacttcttagcaataaaagtgatgat 27045424  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 12 - 110
Target Start/End: Original strand, 22626469 - 22626567
Alignment:
Q  12 ttttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaattgtgagtaggg 110  Q
    ||||| |||||| ||||||||||||| ||||||||||||||||||||||| ||||||||  || ||| |||||| ||||||||||||||||||| ||||    
T  22626469 ttttctaccaccaccggattagtaatatccgaattaggtagaataatcaagcaattagcattattgactctccactcatattggtaattgtgagaaggg 22626567  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 21785883 - 21785986
Alignment:
Q  12 ttttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaattgtgagtagggt 111  Q
    ||||| ||||||| |||||||||||| || ||||||||||||| ||||||  |||||||  || ||| |||||| |||| |||||| |||| || ||||     
T  21785883 ttttctaccaccttcggattagtaatatctgaattaggtagaaaaatcaagaaattagcattattgactctccactcatgttggtacttgttagaagggc 21785982  T
Q  112 catg 115  Q
    ||||    
T  21785983 catg 21785986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 206; Significance: 1e-113; HSPs: 7)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 22062943 - 22063168
Alignment:
Q  1 cataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |||||||||    
T  22062943 cataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccatgcatgttggtaatt 22063042  T
Q  101 gtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttgatcccttgattcacactcacccca 200  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||    
T  22063043 gtgagtagagtcatggtttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttgatcccttgattcatactcacccca 22063142  T
Q  201 aacttcttagcaataaaagtgatgat 226  Q
    ||||||||||||||||||||||||||    
T  22063143 aacttcttagcaataaaagtgatgat 22063168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 44 - 226
Target Start/End: Original strand, 19587034 - 19587222
Alignment:
Q  44 attaggtagaataatcaaacaattagctctaatgattctccattcatattggtaattgtgagtagggtcatgggttttaaggaatgacaaagt------a 137  Q
    ||||||||||||||||||||||||||||||||| ||||||| || |||||||||||||| ||||||  |||||||| ||||||| ||||||||      |    
T  19587034 attaggtagaataatcaaacaattagctctaataattctccgtttatattggtaattgtaagtaggtccatgggttctaaggaaggacaaagtagtgaga 19587133  T
Q  138 gtataaaagtttagataatagttctcatctatcctcttgatcccttgattcacactcaccccaaacttcttagcaataaaagtgatgat 226  Q
    ||||| |||| |||||||||||||   ||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||    
T  19587134 gtatataagtgtagataatagttcctctctatcctcttgatcccttgattcagactcaccccaaacttcctagcaataaaggtgatgat 19587222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 18189001 - 18189116
Alignment:
Q  1 cataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaatt 100  Q
    |||||| ||| ||||| |||||||||||||||||| | ||||||||||||||||||||||| ||||||||  || ||| |||||| ||||||||||||||    
T  18189001 cataaaccaagttttctaccacctccggattagtattatccgaattaggtagaataatcaagcaattagcattattgactctccactcatattggtaatt 18189100  T
Q  101 gtgagtagggtcatgg 116  Q
    ||||| ||||||||||    
T  18189101 gtgagaagggtcatgg 18189116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 132
Target Start/End: Original strand, 23519183 - 23519314
Alignment:
Q  1 cataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaatt 100  Q
    ||||||||||||||||||||| |||||||||||| |||||| ||| |||||||||||||||||||||||| ||| | | | |||   |||||||||| ||    
T  23519183 cataaagcaaattttccaccatctccggattagttatgtccaaataaggtagaataatcaaacaattagccctatttactttccgcacatattggtagtt 23519282  T
Q  101 gtgagtagggtcatgggttttaaggaatgaca 132  Q
    ||||| ||||||||||||| ||||||| ||||    
T  23519283 gtgagaagggtcatgggttataaggaaagaca 23519314  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 105
Target Start/End: Complemental strand, 17818298 - 17818194
Alignment:
Q  1 cataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaatt 100  Q
    |||||| ||| ||||| ||||||| |||||||||||| || ||||||||||||||||||||  |||||||  || ||| |||||| ||||||||||||||    
T  17818298 cataaaccaagttttctaccacctacggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactctccactcatattggtaatt 17818199  T
Q  101 gtgag 105  Q
    |||||    
T  17818198 gtgag 17818194  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 9 - 116
Target Start/End: Complemental strand, 18852794 - 18852688
Alignment:
Q  9 aaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaattgtgagtag 108  Q
    |||||||| |||| ||||||||||||||| || |||||||||||||||||| || || || |  || | | |||||| ||||||||||||||||||| ||    
T  18852794 aaattttctaccatctccggattagtaatatctgaattaggtagaataatc-aagaaataacattatttactctccactcatattggtaattgtgagaag 18852696  T
Q  109 ggtcatgg 116  Q
    || |||||    
T  18852695 ggccatgg 18852688  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 198 - 226
Target Start/End: Complemental strand, 29685112 - 29685084
Alignment:
Q  198 ccaaacttcttagcaataaaagtgatgat 226  Q
    |||||||||||||||||||||||||||||    
T  29685112 ccaaacttcttagcaataaaagtgatgat 29685084  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 206; Significance: 1e-113; HSPs: 9)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 206; E-Value: 1e-113
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 6813644 - 6813419
Alignment:
Q  1 cataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||    
T  6813644 cataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccatgcatattggtaatt 6813545  T
Q  101 gtgagtagggtcatgggttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttgatcccttgattcacactcacccca 200  Q
    |||||||| ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| ||    
T  6813544 gtgagtagagtcatggtttttaaggaatgacaaagtagtataaaagtttagataatagttctcatctatcctcttgatcccttgattcatactcacctca 6813445  T
Q  201 aacttcttagcaataaaagtgatgat 226  Q
    ||||||||||||||||||||||||||    
T  6813444 aacttcttagcaataaaagtgatgat 6813419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 152; E-Value: 1e-80
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 12777936 - 12778170
Alignment:
Q  1 cataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaatt 100  Q
    ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||| ||||||||||||||||| |||||    
T  12777936 cataaagcaaattttccaccacctccgaattagtaatgtccgaattaggtagaataatcaaacaattagttctaataattctccattcatattgataatt 12778035  T
Q  101 gtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcctcttgatcccttgattcacactc 194  Q
    ||||||||||||||||||| ||||||| ||||||||      |||| | |||||| ||||||| || || ||||||||||||||||||||||||||||||    
T  12778036 gtgagtagggtcatgggttctaaggaaggacaaagtagtgagagtaaataagtttggataataattttcctctatcctcttgatcccttgattcacactc 12778135  T
Q  195 accccaaacttcttagcaataaaagtgatgatgtc 229  Q
    |||| |||| ||||||||||||||| |||||||||    
T  12778136 accctaaacctcttagcaataaaagggatgatgtc 12778170  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 15024485 - 15024254
Alignment:
Q  1 cataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaatt 100  Q
    ||||| |||||||||||||||||||||||||||| ||||| | ||||||||||||||| ||||||||||||||| | |||||||||||||||||||||||    
T  15024485 cataatgcaaattttccaccacctccggattagttatgtctggattaggtagaataataaaacaattagctctattaattctccattcatattggtaatt 15024386  T
Q  101 gtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcctcttgatcccttgattcacactc 194  Q
    ||||||||||||||||||| ||||||| ||||||||      |||||| |||| ||||||||||| | | ||||||||||||||||||||||||||||||    
T  15024385 gtgagtagggtcatgggttctaaggaaggacaaagtagtgagagtatataagtatagataatagtacccctctatcctcttgatcccttgattcacactc 15024286  T
Q  195 accccaaacttcttagcaataaaagtgatgat 226  Q
    |||||||||||  |||||||||||||||||||    
T  15024285 accccaaactttctagcaataaaagtgatgat 15024254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 20559812 - 20559709
Alignment:
Q  12 ttttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaattgtgagtagggt 111  Q
    ||||| |||||||||| ||||||||| || ||||||||||||||||||||  ||||||   || ||| |||||| ||||||||||||||||||| ||||     
T  20559812 ttttctaccacctccgaattagtaatatctgaattaggtagaataatcaagaaattagtagtattgactctccactcatattggtaattgtgagaagggc 20559713  T
Q  112 catg 115  Q
    ||||    
T  20559712 catg 20559709  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 20562120 - 20562017
Alignment:
Q  12 ttttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaattgtgagtagggt 111  Q
    ||||| |||||||||| ||||||||| || ||||||||||||||||||||  ||||||   || ||| |||||| ||||||||||||||||||| ||||     
T  20562120 ttttctaccacctccgaattagtaatatctgaattaggtagaataatcaagaaattagtagtattgactctccactcatattggtaattgtgagaagggc 20562021  T
Q  112 catg 115  Q
    ||||    
T  20562020 catg 20562017  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 20564428 - 20564325
Alignment:
Q  12 ttttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaattgtgagtagggt 111  Q
    ||||| |||||||||| ||||||||| || ||||||||||||||||||||  ||||||   || ||| |||||| ||||||||||||||||||| ||||     
T  20564428 ttttctaccacctccgaattagtaatatctgaattaggtagaataatcaagaaattagtagtattgactctccactcatattggtaattgtgagaagggc 20564329  T
Q  112 catg 115  Q
    ||||    
T  20564328 catg 20564325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 45; E-Value: 9e-17
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 13090247 - 13090351
Alignment:
Q  12 ttttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaattgtgagtagggt 111  Q
    ||||| ||||||| |||||||||||| || ||||||||||||||||||||  |||||||  || ||| || ||| ||||||||| ||||||||| ||||     
T  13090247 ttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactcaccactcatattgggaattgtgagaagggc 13090346  T
Q  112 catgg 116  Q
    |||||    
T  13090347 catgg 13090351  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 9362397 - 9362501
Alignment:
Q  12 ttttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaattgtgagtagggt 111  Q
    ||||| ||||||| |||||||||||| |  ||||||||||||||||||||  |||||||  || ||| |||||| |||||||||  |||||||| ||||     
T  9362397 ttttctaccaccttcggattagtaatatttgaattaggtagaataatcaagaaattagcattattgactctccactcatattggggattgtgagaagggc 9362496  T
Q  112 catgg 116  Q
    |||||    
T  9362497 catgg 9362501  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 13096484 - 13096380
Alignment:
Q  12 ttttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaattgtgagtagggt 111  Q
    ||||| ||||||| |||||||||||| || ||||||||||||||||||||  ||||||   || ||| |||||| |||| |||| ||||||||| ||||     
T  13096484 ttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagaattattgactctccactcatgttgggaattgtgagaagggc 13096385  T
Q  112 catgg 116  Q
    |||||    
T  13096384 catgg 13096380  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0090 (Bit Score: 197; Significance: 1e-107; HSPs: 1)
Name: scaffold0090
Description:

Target: scaffold0090; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 29543 - 29312
Alignment:
Q  1 cataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaatt 100  Q
    |||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  29543 cataaagcaaattttctaccacctccggattagtaatgtccgaattaggtagaataatcatacaattagctctaatgattctccattcatattggtaatt 29444  T
Q  101 gtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcctcttgatcccttgattcacactc 194  Q
    ||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||    
T  29443 gtgagtagggtcatgggttttaaggaatgacaaagtagtgagagtataaaagtttagataatagttctcatctatcctcttgatcccttgattcatactc 29344  T
Q  195 accccaaacttcttagcaataaaagtgatgat 226  Q
    ||||||||||||||||||||||||||||||||    
T  29343 accccaaacttcttagcaataaaagtgatgat 29312  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 1 - 226
Target Start/End: Complemental strand, 20001080 - 20000852
Alignment:
Q  1 cataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaatt 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20001080 cataaagcaaattttccaccacctccagattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaatt 20000981  T
Q  101 gtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcctcttgatcccttgattcacactc 194  Q
    ||||||||||||||||||||||||||||||||||||      ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20000980 gtgagtagggtcatgggttttaaggaatgacaaagtagtgagagtataaaagtttagataatagttctcatctatcctcttgatcccttgattcacactc 20000881  T
Q  195 accccaaacttcttagcaataaaagtgatgat 226  Q
    ||||||||   |||||||||||||||||||||    
T  20000880 accccaaa---cttagcaataaaagtgatgat 20000852  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 56; E-Value: 2e-23
Query Start/End: Original strand, 12 - 119
Target Start/End: Original strand, 21855216 - 21855323
Alignment:
Q  12 ttttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaattgtgagtagggt 111  Q
    ||||| ||||||| |||||||||||| || ||||||||||||||||||||  |||||||  || ||| |||||| ||||||||||||||||||| |||||    
T  21855216 ttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactctccactcatattggtaattgtgagaagggt 21855315  T
Q  112 catgggtt 119  Q
     |||||||    
T  21855316 tatgggtt 21855323  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 12 - 115
Target Start/End: Complemental strand, 17619515 - 17619412
Alignment:
Q  12 ttttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaattgtgagtagggt 111  Q
    ||||| ||||||| |||||||||||| || ||||||||||||||||||||  |||||||  || ||| |||||| ||||||||| ||||||||| ||||     
T  17619515 ttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactctccactcatattggaaattgtgagaagggc 17619416  T
Q  112 catg 115  Q
    ||||    
T  17619415 catg 17619412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 48; E-Value: 1e-18
Query Start/End: Original strand, 12 - 115
Target Start/End: Original strand, 20040512 - 20040615
Alignment:
Q  12 ttttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaattgtgagtagggt 111  Q
    ||||| |||||||| ||||||||||| || ||||||||||||||||||||  ||||||   || ||| |||||| ||||||||||||||||||| ||||     
T  20040512 ttttctaccacctctggattagtaatatctgaattaggtagaataatcaagaaattagtagtattgactctccactcatattggtaattgtgagaagggc 20040611  T
Q  112 catg 115  Q
    ||||    
T  20040612 catg 20040615  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0035 (Bit Score: 169; Significance: 9e-91; HSPs: 1)
Name: scaffold0035
Description:

Target: scaffold0035; HSP #1
Raw Score: 169; E-Value: 9e-91
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 51985 - 52216
Alignment:
Q  1 cataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaatt 100  Q
    ||||||||||||||||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||    
T  51985 cataaagcaaattttccaccacctccggaatagtaatgtccgaattaggtagaatagtcaaacaattagctctaataattctccattcatattggtaatt 52084  T
Q  101 gtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcctcttgatcccttgattcacactc 194  Q
    ||||||||||||||||||| ||||||| ||||||||      |||||| ||||||||||||||||| || ||||||||||||||||||||||||||||||    
T  52085 gtgagtagggtcatgggttataaggaaggacaaagtagtaagagtatataagtttagataatagttttcctctatcctcttgatcccttgattcacactc 52184  T
Q  195 accccaaacttcttagcaataaaagtgatgat 226  Q
    |||| |||| ||||||||||||||||||||||    
T  52185 accctaaacctcttagcaataaaagtgatgat 52216  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 153; Significance: 3e-81; HSPs: 7)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 153; E-Value: 3e-81
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 23712139 - 23712370
Alignment:
Q  1 cataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaatt 100  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||| || ||||||||||||||||||||    
T  23712139 cataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaaaaattagttctaataatcctccattcatattggtaatt 23712238  T
Q  101 gtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcctcttgatcccttgattcacactc 194  Q
    ||||||| ||||||||||| ||||||| ||||||||      |||||| |||||| ||||||| || |||||||||||||||||||||||||||||||||    
T  23712239 gtgagtatggtcatgggttctaaggaaagacaaagtagtgagagtatataagtttggataataattttcatctatcctcttgatcccttgattcacactc 23712338  T
Q  195 accccaaacttcttagcaataaaagtgatgat 226  Q
    |||| |||| ||||||||| ||||||||||||    
T  23712339 accctaaacctcttagcaacaaaagtgatgat 23712370  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 110
Target Start/End: Original strand, 20446277 - 20446386
Alignment:
Q  1 cataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaatt 100  Q
    |||||| ||| ||||| ||||||| |||||||||||| || ||||||||||||||||||||  |||||||  || ||| |||||| ||||||||||||||    
T  20446277 cataaaccaagttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactctccactcatattggtaatt 20446376  T
Q  101 gtgagtaggg 110  Q
    ||||| ||||    
T  20446377 gtgagaaggg 20446386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 53; E-Value: 1e-21
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 21282342 - 21282458
Alignment:
Q  1 cataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaa-ttagctctaatgattctccattcatattggtaat 99  Q
    |||||| ||| ||||| |||||||||||||||||||| | |||||| |||||||||||||| ||| |||||  || ||| |||||| |||||||||||||    
T  21282342 cataaaccaagttttctaccacctccggattagtaatattcgaatttggtagaataatcaagcaatttagcgttattgactctccactcatattggtaat 21282441  T
Q  100 tgtgagtagggtcatgg 116  Q
    |||||| ||||| ||||    
T  21282442 tgtgagaagggttatgg 21282458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 18487495 - 18487596
Alignment:
Q  1 cataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaatt 100  Q
    |||||| ||| ||||| |||||||| |||||| |||| || ||||||||||||||||||||  |||||||  || ||| |||||| ||||||||||||||    
T  18487495 cataaaccaagttttctaccacctcaggattaataatatctgaattaggtagaataatcaagaaattagcattattgactctccactcatattggtaatt 18487594  T
Q  101 gt 102  Q
    ||    
T  18487595 gt 18487596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 44; E-Value: 3e-16
Query Start/End: Original strand, 12 - 99
Target Start/End: Complemental strand, 24218603 - 24218516
Alignment:
Q  12 ttttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaat 99  Q
    ||||| |||| ||||||||||||||| || ||||||||||||||||||||  |||||||  || ||| |||||| |||||||||||||    
T  24218603 ttttctaccatctccggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactctccactcatattggtaat 24218516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 12 - 105
Target Start/End: Original strand, 23602080 - 23602173
Alignment:
Q  12 ttttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaattgtgag 105  Q
    ||||| ||||||| |||||||||||| || ||||||||||||||||||||  |||||||  || ||| || ||| ||||||||| |||||||||    
T  23602080 ttttctaccaccttcggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactcgccactcatattgggaattgtgag 23602173  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 24939304 - 24939200
Alignment:
Q  12 ttttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaattgtgagtagggt 111  Q
    ||||| ||||||| || ||||||||| || ||||||||||||||||||||  |||||||  || ||| || ||| ||||||||| ||||||||| ||||     
T  24939304 ttttctaccaccttcgaattagtaatatctgaattaggtagaataatcaagaaattagcattattgactcgccactcatattgggaattgtgagaagggc 24939205  T
Q  112 catgg 116  Q
    |||||    
T  24939204 catgg 24939200  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0485 (Bit Score: 142; Significance: 1e-74; HSPs: 1)
Name: scaffold0485
Description:

Target: scaffold0485; HSP #1
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 11336 - 11568
Alignment:
Q  1 cataaagcaaatttt-ccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaat 99  Q
    ||||||||||||||| ||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||||||||| |||||||| |||||||||||||    
T  11336 cataaagcaaatttttccaccacctccagattagttatgtccggattaggtagaataatcaaacaattagctctaataattctccactcatattggtaat 11435  T
Q  100 tgtgagtagggtcatgggttttaaggaatgacaaagtag------tataaaagtttagataatagttctcatctatcctcttgatcccttgattcacact 193  Q
    |||||||| ||||||||||| ||||||| ||||||||||      |||| |||| ||||||||||||| | |||||||||||||||||||||||||||||    
T  11436 tgtgagtatggtcatgggttctaaggaaggacaaagtagtgagattatataagtctagataatagttcccctctatcctcttgatcccttgattcacact 11535  T
Q  194 caccccaaacttcttagcaataaaagtgatgat 226  Q
    ||||||||||||  |||||||||| ||||||||    
T  11536 caccccaaactttctagcaataaaggtgatgat 11568  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 69; Significance: 4e-31; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 69; E-Value: 4e-31
Query Start/End: Original strand, 1 - 226
Target Start/End: Original strand, 25339538 - 25339769
Alignment:
Q  1 cataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaatt 100  Q
    ||||||| |||||||||||||||||| ||||||| ||||||| ||||||||||||||||||||||||||| ||| |||   |||| ||||||||||||||    
T  25339538 cataaagaaaattttccaccacctccagattagttatgtccggattaggtagaataatcaaacaattagccctattgaccttccactcatattggtaatt 25339637  T
Q  101 gtgagtagggtcatgggttttaaggaatgacaaagt------agtataaaagtttagataatagttctcatctatcctcttgatcccttgattcacactc 194  Q
    |||||| ||| |||| ||| |||| || |||| |||       ||||  |||| || |  || |||| | |||||||| |||||||||| | |||||||     
T  25339638 gtgagttgggccatgagttctaagaaaggacatagtggtgagggtatctaagtctaaactattgttcccctctatcctattgatccctttactcacactt 25339737  T
Q  195 accccaaacttcttagcaataaaagtgatgat 226  Q
    || ||||||||| ||||||| || ||||||||    
T  25339738 actccaaacttcctagcaatgaaggtgatgat 25339769  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 116
Target Start/End: Complemental strand, 24501112 - 24500997
Alignment:
Q  1 cataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaatt 100  Q
    |||||| ||| ||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||  || ||| |||||| | ||||||||||||    
T  24501112 cataaatcaagttttctaccacctccggattagtaatgtccgaattaggtagaataatcaagcaattagcattattgactctccactaatattggtaatt 24501013  T
Q  101 gtgagtagggtcatgg 116  Q
    ||||| |||| |||||    
T  24501012 gtgagaagggccatgg 24500997  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0220 (Bit Score: 68; Significance: 2e-30; HSPs: 1)
Name: scaffold0220
Description:

Target: scaffold0220; HSP #1
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 1 - 116
Target Start/End: Original strand, 11745 - 11860
Alignment:
Q  1 cataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaatt 100  Q
    |||||| ||| ||||| ||||||||| |||||||||| ||||||||||||||||||||||| ||||||||  || ||| |||||| ||||||||||||||    
T  11745 cataaaccaagttttctaccacctccagattagtaatatccgaattaggtagaataatcaagcaattagcattattgactctccactcatattggtaatt 11844  T
Q  101 gtgagtagggtcatgg 116  Q
    ||||| ||||||||||    
T  11845 gtgagaagggtcatgg 11860  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0026 (Bit Score: 61; Significance: 3e-26; HSPs: 1)
Name: scaffold0026
Description:

Target: scaffold0026; HSP #1
Raw Score: 61; E-Value: 3e-26
Query Start/End: Original strand, 12 - 116
Target Start/End: Complemental strand, 17138 - 17034
Alignment:
Q  12 ttttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaattgtgagtagggt 111  Q
    ||||| |||||||| | ||||||||| ||||||||||||||||||||||| ||||||||  || ||| |||||| ||||||||||||||||||| |||||    
T  17138 ttttctaccacctctgtattagtaatatccgaattaggtagaataatcaagcaattagcattattgactctccactcatattggtaattgtgagaagggt 17039  T
Q  112 catgg 116  Q
    |||||    
T  17038 catgg 17034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0222 (Bit Score: 54; Significance: 4e-22; HSPs: 1)
Name: scaffold0222
Description:

Target: scaffold0222; HSP #1
Raw Score: 54; E-Value: 4e-22
Query Start/End: Original strand, 1 - 102
Target Start/End: Complemental strand, 18610 - 18509
Alignment:
Q  1 cataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaatt 100  Q
    |||||| ||| ||||| |||||||||||||||||||| || ||||||||||||||||||||  |||||||  || ||| |||||| ||||||||||||||    
T  18610 cataaaccaagttttctaccacctccggattagtaatatctgaattaggtagaataatcaagaaattagcattattgactctccactcatattggtaatt 18511  T
Q  101 gt 102  Q
    ||    
T  18510 gt 18509  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0566 (Bit Score: 51; Significance: 2e-20; HSPs: 1)
Name: scaffold0566
Description:

Target: scaffold0566; HSP #1
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 115
Target Start/End: Complemental strand, 1389 - 1275
Alignment:
Q  1 cataaagcaaattttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaatt 100  Q
    |||||| ||| ||||| ||||||||| |||||||||| || ||||||||||||||||||||  |||||||   | ||| |||||| ||||||||||||||    
T  1389 cataaaccaagttttctaccacctccagattagtaatatctgaattaggtagaataatcaagaaattagcataattgactctccactcatattggtaatt 1290  T
Q  101 gtgagtagggtcatg 115  Q
    || || |||||||||    
T  1289 gttagaagggtcatg 1275  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0113 (Bit Score: 37; Significance: 0.000000000005; HSPs: 1)
Name: scaffold0113
Description:

Target: scaffold0113; HSP #1
Raw Score: 37; E-Value: 0.000000000005
Query Start/End: Original strand, 12 - 116
Target Start/End: Original strand, 38073 - 38177
Alignment:
Q  12 ttttccaccacctccggattagtaatgtccgaattaggtagaataatcaaacaattagctctaatgattctccattcatattggtaattgtgagtagggt 111  Q
    ||||| |||||||  | ||||||||| || ||||||||||||||||||||  |||||||  || ||| || ||| ||||||||| ||||||||| ||||     
T  38073 ttttctaccaccttagaattagtaatatctgaattaggtagaataatcaagaaattagcattattgactcgccactcatattggaaattgtgagaagggc 38172  T
Q  112 catgg 116  Q
    |||||    
T  38173 catgg 38177  T

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