View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6413_low_4 (Length: 581)
Name: NF6413_low_4
Description: NF6413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6413_low_4 |
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Alignment Details
Target: chr3 (Bit Score: 342; Significance: 0; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 342; E-Value: 0
Query Start/End: Original strand, 161 - 573
Target Start/End: Original strand, 30730612 - 30731037
Alignment:
| Q |
161 |
atagacaaataataatgaaaaatgaaatgggtttgtatatacttggagtcaaggtcattgacctgtgaagaagtaaataatatattaaaaaactttgctg |
260 |
Q |
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| T |
30730612 |
atagacaaataataatgaaaaatgaaatgggtttgtatatacttggagtcaaggtcattgacctgtgaagaagtaaattatatattaaaaaactctgctg |
30730711 |
T |
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| Q |
261 |
aaaatgcatttaactcaaatgaaaactattgaaactattaacatcatgaacaatcggagagagaattctgatgagaatggagcattttccaatccattca |
360 |
Q |
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| T |
30730712 |
aaaatgcatttaactcaaatgaaaactattgaaactattaacatcatgaacaatcggagagagaattctgatgagaatggagcattttccaattcattca |
30730811 |
T |
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| Q |
361 |
actcaaatgaattattacattgtggaaggtaattatagtttaaacatctaactaattctgttagaactaaatccgtcttaagattattttgcacgggtct |
460 |
Q |
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| T |
30730812 |
actcaaatgaattattacattgtggaaggtaattatagtttaaacatctaactaattcagttagaactaaatccgtcttaagattattttgcacgggtct |
30730911 |
T |
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| Q |
461 |
agtgtttaatttatgcttatgta-------------aattagtgtttttagaaaaattatatgcactctatgaatggttgaaactaagaattatctaaat |
547 |
Q |
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| T |
30730912 |
agtgtgtaatttatacttatgtaagttagtgtttttaataagtgtttttagaaaaattatatgcactctatgaatggttgaaattaagaattatctaaat |
30731011 |
T |
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| Q |
548 |
aaaaattcttctagagagatgatgtc |
573 |
Q |
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| T |
30731012 |
aaaaattcttctaaagatatgatgtc |
30731037 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 91; E-Value: 8e-44
Query Start/End: Original strand, 1 - 130
Target Start/End: Original strand, 30730463 - 30730593
Alignment:
| Q |
1 |
tcatcataatcatgctaaaaggtatatttcgaagagataagtacagcgagttgtatatctaaacggcaagaaaaatgaaataaatatgcatggttg-nnn |
99 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
30730463 |
tcatcataatcatgctaaaaggtatatttcgaagagataagtacagcgatttgtatatctaaacggcaagaaaaatgaaatcaatatgcatggttgaaaa |
30730562 |
T |
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| Q |
100 |
nnnnntagtataatgaaaagagaatatacaa |
130 |
Q |
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| T |
30730563 |
aaaaatagtataatgaaaagagaatatacaa |
30730593 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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