View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6413_low_5 (Length: 444)
Name: NF6413_low_5
Description: NF6413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6413_low_5 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 407; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 14 - 428
Target Start/End: Complemental strand, 34569126 - 34568712
Alignment:
| Q |
14 |
agagcataagattatgaaaagaaccggttgtatggactatgacactacaccttgggaaccagtaaaacctgatgtactcgaaaggcatgttacgtaccaa |
113 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34569126 |
agagcataagattatgaaaagaaccggttgtatggactatgacactacaccttgggaaccagtaaaacctgatgtactcgaaaggcatgttacgtaccaa |
34569027 |
T |
|
| Q |
114 |
tttaaccggcatgtgtcagtttttgatgttacaagcacacaacaaaaatatccaaatacaaacactgaaggatggattgtgaatgaagttatgatcctca |
213 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34569026 |
tttaaccggcatgtgtcagtttttgatgttacaagcacacaacaaaaatatccaaatacaaacactgaaggatggattgtgaatgaagttatgatcctca |
34568927 |
T |
|
| Q |
214 |
atggtgttccattttccgatcactttcgtgtatgctaaatttaaaactcagtcttatattgtattttttataaagttggttattgttattgttccataga |
313 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
34568926 |
atggtgttccattttccgatcactttcgtgtatgctaaatttaaaactcagtcttatattgtatttgttataaagttggttattgttattgttccataga |
34568827 |
T |
|
| Q |
314 |
agagagtctaatatttttgcttgcagattcattttaggtacgaaattgagaaatcgactcttggtgaatgtgcttgcaagtgtgatgtatacattggcat |
413 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34568826 |
agagagtctaatatttttgcttgcagattcattttaggtacgaaattgagaaatcggctcttggtgaatgtgcttgcaagtgtgatgtatacattggcat |
34568727 |
T |
|
| Q |
414 |
tatgtggcttaggag |
428 |
Q |
| |
|
||||||||||||||| |
|
|
| T |
34568726 |
tatgtggcttaggag |
34568712 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University