View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6413_low_8 (Length: 361)

Name: NF6413_low_8
Description: NF6413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6413_low_8
NF6413_low_8
[»] chr7 (6 HSPs)
chr7 (1-361)||(27448216-27448574)
chr7 (32-117)||(19503264-19503347)
chr7 (32-115)||(45430159-45430240)
chr7 (32-117)||(15877252-15877336)
chr7 (323-361)||(27430570-27430608)
chr7 (32-115)||(427984-428067)
[»] chr8 (1 HSPs)
chr8 (32-117)||(43460529-43460612)
[»] chr4 (3 HSPs)
chr4 (32-117)||(48058675-48058758)
chr4 (63-117)||(10462969-10463022)
chr4 (32-117)||(56272757-56272840)
[»] chr2 (5 HSPs)
chr2 (66-115)||(13450532-13450580)
chr2 (23-117)||(35309976-35310070)
chr2 (23-117)||(22594906-22594998)
chr2 (1-45)||(25740133-25740177)
chr2 (63-115)||(34438333-34438384)
[»] chr6 (1 HSPs)
chr6 (32-115)||(2197960-2198042)
[»] chr1 (1 HSPs)
chr1 (63-115)||(6365245-6365296)
[»] chr5 (2 HSPs)
chr5 (32-117)||(17465498-17465581)
chr5 (1-117)||(41631365-41631480)
[»] chr3 (4 HSPs)
chr3 (60-117)||(3082327-3082383)
chr3 (32-101)||(41902129-41902197)
chr3 (1-117)||(7671946-7672061)
chr3 (32-115)||(32621517-32621599)


Alignment Details
Target: chr7 (Bit Score: 241; Significance: 1e-133; HSPs: 6)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 241; E-Value: 1e-133
Query Start/End: Original strand, 1 - 361
Target Start/End: Original strand, 27448216 - 27448574
Alignment:
Q  1 tcgatgaaataaaatttgaatgttttgaatatttattactcataaaagtgaatactattttatttttactataaaatgtaaaatatttagtatggttctt 100  Q
    |||||||||||||||||||||||||| |||||||||||||||||||| |||||||| |||| ||||||||||||||||||||||||||||||||||||||    
T  27448216 tcgatgaaataaaatttgaatgtttttaatatttattactcataaaaatgaatactgtttt-tttttactataaaatgtaaaatatttagtatggttctt 27448314  T
Q  101 aataaacaatgaaatgannnnnnnccctatgaaagtgttttctaaaatataaaatcgacaaatagcttcnnnnnnnnnnnnngacaaaaacaaatagctt 200  Q
    |||||||||||||| ||        ||||||||||||||||||||||||||||||||||||||||||||             |||||||||||||| |||    
T  27448315 aataaacaatgaaacgattttttttcctatgaaagtgttttctaaaatataaaatcgacaaatagcttcttttttttttt--gacaaaaacaaatacctt 27448412  T
Q  201 ttttaattaataaaaatgttagttaattcattgaattaagaaacaagtgcattgatatagttcaatttaaaagtgtatcatagaaactcccctgt-aaaa 299  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||||||| |||||||||||||| | ||||    
T  27448413 ttttaattaataaaaatgttagttaattcattgaattaagaaacaagtgcattgatacagttcaatttacaagtgtattatagaaactcccctataaaaa 27448512  T
Q  300 tggtttgtgaggttaatgtgtctattaaactcatataaatatatataccttggaaaatcggt 361  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27448513 tggtttgtgaggttaatgtgtctattaaactcatataaatatatataccttggaaaatcggt 27448574  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 117
Target Start/End: Complemental strand, 19503347 - 19503264
Alignment:
Q  32 tttattactcataaaagtgaatactattttatttttactataaaatgtaaaatatttagtatggttcttaataaacaatgaaatga 117  Q
    ||||||||| |||| |||||||| | | |||||||| | ||||||||||||||| |||||||| ||||| ||||| ||||||||||    
T  19503347 tttattacttataatagtgaatatt-tattattttttcaataaaatgtaaaataattagtatgattctt-ataaataatgaaatga 19503264  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 32 - 115
Target Start/End: Complemental strand, 45430240 - 45430159
Alignment:
Q  32 tttattactcataaaagtgaatactattttatttttactataaaatgtaaaatatttagtatggttcttaataaacaatgaaat 115  Q
    ||||||||| |||| |||||||| | | |||||||| | ||||||||||||||| |||||||| ||||| ||||||||| ||||    
T  45430240 tttattacttataatagtgaatatt-tattattttttcaataaaatgtaaaataattagtatgattctt-ataaacaataaaat 45430159  T

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Target: chr7; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 15877252 - 15877336
Alignment:
Q  32 tttattactcataaaagtgaatactattttatttttactataaaatgtaaaatatttagtatggttcttaataaac-aatgaaatga 117  Q
    ||||||||| |||| |||||||| | | |||||||| | ||||||||||||||| |||||||| ||||| |||||| ||||||||||    
T  15877252 tttattacttataatagtgaatatt-tattattttttcaataaaatgtaaaataattagtatgattctt-ataaacaaatgaaatga 15877336  T

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Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 323 - 361
Target Start/End: Original strand, 27430570 - 27430608
Alignment:
Q  323 attaaactcatataaatatatataccttggaaaatcggt 361  Q
    ||||||||| || ||||||||||||||||||||||||||    
T  27430570 attaaactcgtaaaaatatatataccttggaaaatcggt 27430608  T

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Target: chr7; HSP #6
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 115
Target Start/End: Complemental strand, 428067 - 427984
Alignment:
Q  32 tttattactcataaaagtgaatactattttatttttact-ataaaatgtaaaatatttagtatggttcttaataaacaatgaaat 115  Q
    |||||||||||||| |||||||| |  ||  ||||| || ||||||||||||| | |||||||| ||||| ||||||||||||||    
T  428067 tttattactcataatagtgaatatttattattttttcctgataaaatgtaaaaaaattagtatgattctt-ataaacaatgaaat 427984  T

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Target: chr8 (Bit Score: 38; Significance: 0.000000000002; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 43460529 - 43460612
Alignment:
Q  32 tttattactcataaaagtgaatactattttatttttactataaaatgtaaaatatttagtatggttcttaataaacaatgaaatga 117  Q
    ||||||||| |||| |||||||| | | |||||||| | ||||||||||||||| |||||||| ||||| ||||||||||||||||    
T  43460529 tttattacttataatagtgaatatt-tattattttttcaataaaatgtaaaataattagtatgattctt-ataaacaatgaaatga 43460612  T

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Target: chr4 (Bit Score: 34; Significance: 0.0000000005; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 48058675 - 48058758
Alignment:
Q  32 tttattactcataaaagtgaatactattttatttttactataaaatgtaaaatatttagtatggttcttaataaacaatgaaatga 117  Q
    ||||||||| |||| |||||||| | | |||||||| | ||||||||||||||| |||||||| || || ||||||||||||||||    
T  48058675 tttattacttataatagtgaatatt-tattattttttcaataaaatgtaaaataattagtatgatt-tttataaacaatgaaatga 48058758  T

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Target: chr4; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 63 - 117
Target Start/End: Complemental strand, 10463022 - 10462969
Alignment:
Q  63 tttttactataaaatgtaaaatatttagtatggttcttaataaacaatgaaatga 117  Q
    ||||||| ||||||||||||| |||||||||| |||||  |||||||||||||||    
T  10463022 tttttacgataaaatgtaaaagatttagtatgattctt-ttaaacaatgaaatga 10462969  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 117
Target Start/End: Original strand, 56272757 - 56272840
Alignment:
Q  32 tttattactcataaaagtgaatactattttatttttactataaaatgtaaaatatttagtatggttcttaataaacaatgaaatga 117  Q
    ||||||||| |||| |||||||| | | ||||||||   ||||||||||||||| |||||||| ||||| ||||| ||||||||||    
T  56272757 tttattacttataatagtgaatatt-tattatttttttaataaaatgtaaaataattagtatgattctt-ataaataatgaaatga 56272840  T

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Target: chr2 (Bit Score: 34; Significance: 0.0000000005; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 66 - 115
Target Start/End: Original strand, 13450532 - 13450580
Alignment:
Q  66 ttactataaaatgtaaaatatttagtatggttcttaataaacaatgaaat 115  Q
    |||| ||||||||||||||||||||||| |||||| ||||||||||||||    
T  13450532 ttacgataaaatgtaaaatatttagtatagttctt-ataaacaatgaaat 13450580  T

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Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.000000008
Query Start/End: Original strand, 23 - 117
Target Start/End: Complemental strand, 35310070 - 35309976
Alignment:
Q  23 ttttgaatatttattactcataaaagtgaatact-attttatttttactataaaatgtaaaatatttagtatggttcttaataaacaatgaaatga 117  Q
    |||| ||| |||||||||| ||| || ||||| | ||| | ||||||  ||||||||||||| |||||||||| ||||| ||||||||||||||||    
T  35310070 tttttaatttttattactcgtaatagagaatattgattatttttttataataaaatgtaaaaaatttagtatgattctt-ataaacaatgaaatga 35309976  T

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Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 23 - 117
Target Start/End: Original strand, 22594906 - 22594998
Alignment:
Q  23 ttttgaatatttattactcataaaagtgaatactattttatttttactataaaatgtaaaatatttagtatggttcttaataaacaatgaaatga 117  Q
    |||| ||| ||||||||| |||| |||| ||| | | |||||||| | |||||||||||| || |||||||| ||||| ||||||||||||||||    
T  22594906 tttttaatttttattacttataatagtgtatatt-tattattttttcaataaaatgtaaactaattagtatgattctt-ataaacaatgaaatga 22594998  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 45
Target Start/End: Original strand, 25740133 - 25740177
Alignment:
Q  1 tcgatgaaataaaatttgaatgttttgaatatttattactcataa 45  Q
    ||||||||||||||||| | | |||||||| ||||||||||||||    
T  25740133 tcgatgaaataaaattttatttttttgaatttttattactcataa 25740177  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 63 - 115
Target Start/End: Complemental strand, 34438384 - 34438333
Alignment:
Q  63 tttttactataaaatgtaaaatatttagtatggttcttaataaacaatgaaat 115  Q
    ||||||| ||||||||||||||| |||||||| || || ||||||||||||||    
T  34438384 tttttacaataaaatgtaaaataattagtatgctt-tttataaacaatgaaat 34438333  T

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Target: chr6 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 115
Target Start/End: Original strand, 2197960 - 2198042
Alignment:
Q  32 tttattactcataaaagtgaatactattttatttttact-ataaaatgtaaaatatttagtatggttcttaataaacaatgaaat 115  Q
    |||||||||||||| |||||||| | | |||||||| || ||||||||||||| | |||||||| ||||| ||||||||||||||    
T  2197960 tttattactcataatagtgaata-tttattattttttctgataaaatgtaaaaaaattagtatgattctt-ataaacaatgaaat 2198042  T

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Target: chr1 (Bit Score: 33; Significance: 0.000000002; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 63 - 115
Target Start/End: Original strand, 6365245 - 6365296
Alignment:
Q  63 tttttactataaaatgtaaaatatttagtatggttcttaataaacaatgaaat 115  Q
    ||||||| ||||||||||||| |||||||||| |||||| |||||||||||||    
T  6365245 tttttacgataaaatgtaaaa-atttagtatgattcttattaaacaatgaaat 6365296  T

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Target: chr5 (Bit Score: 30; Significance: 0.0000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 117
Target Start/End: Complemental strand, 17465581 - 17465498
Alignment:
Q  32 tttattactcataaaagtgaatactattttatttttactataaaatgtaaaatatttagtatggttcttaataaacaatgaaatga 117  Q
    |||||||||||||   ||||||| |||||| ||||||| |||||||||||||  | ||||||| || || ||||||||||||||||    
T  17465581 tttattactcatattggtgaata-tattttttttttacgataaaatgtaaaaattatagtatgatt-tttataaacaatgaaatga 17465498  T

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Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 41631365 - 41631480
Alignment:
Q  1 tcgatgaaataaaatttgaatgttttgaatatttattactcataaaagtgaatactattttatttttactataaaatgtaaaatatttagtatggttctt 100  Q
    |||| |||||||||||| | | ||  |||| |||||||||||||| | |||||| |  ||  ||||||| |||||||||||| | | || |||| |||||    
T  41631365 tcgacgaaataaaatttaatttttaagaatttttattactcataacaatgaatattgattattttttacgataaaatgtaaattttgtaatatgattctt 41631464  T
Q  101 aataaacaatgaaatga 117  Q
     ||||||||||||||||    
T  41631465 -ataaacaatgaaatga 41631480  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 60 - 117
Target Start/End: Complemental strand, 3082383 - 3082327
Alignment:
Q  60 ttatttttactataaaatgtaaaatatttagtatggttcttaataaacaatgaaatga 117  Q
    |||||||||| ||||||||||||| | |||||||| || || ||||||||||||||||    
T  3082383 ttatttttacaataaaatgtaaaaaaattagtatgatt-tttataaacaatgaaatga 3082327  T

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Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 32 - 101
Target Start/End: Original strand, 41902129 - 41902197
Alignment:
Q  32 tttattactcataaaagtgaatactattttatttttactataaaatgtaaaatatttagtatggttctta 101  Q
    ||||||||| |||| |||||||| | | |||||||| | ||||||||||||||| |||||||| ||||||    
T  41902129 tttattacttataatagtgaatatt-tattattttttcaataaaatgtaaaataattagtatgattctta 41902197  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 1 - 117
Target Start/End: Original strand, 7671946 - 7672061
Alignment:
Q  1 tcgatgaaataaaatttgaatgttttgaatatttattactcataaaagtgaatactattttatttttactataaaatgtaaaatatttagtatggttctt 100  Q
    |||| |||||||||||| | | || ||| | |||| ||||||||| || ||||  | |||  ||||||| ||||||||||||| | |||||||| || ||    
T  7671946 tcgacgaaataaaatttaatttttctgagtttttagtactcataatagagaattttgtttattttttacaataaaatgtaaaaaaattagtatgatt-tt 7672044  T
Q  101 aataaacaatgaaatga 117  Q
     ||||||||||||||||    
T  7672045 tataaacaatgaaatga 7672061  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 32 - 115
Target Start/End: Original strand, 32621517 - 32621599
Alignment:
Q  32 tttattactcataaaagtgaatactattttatttttact-ataaaatgtaaaatatttagtatggttcttaataaacaatgaaat 115  Q
    |||||||||||||| ||| |||| | | |||||||| || ||||||||||||| | |||||||| ||||| ||||||||||||||    
T  32621517 tttattactcataatagtaaatatt-tattattttttctgataaaatgtaaaaaaattagtatgattctt-ataaacaatgaaat 32621599  T

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