View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6413_low_9 (Length: 348)
Name: NF6413_low_9
Description: NF6413
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6413_low_9 |
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Alignment Details
Target: chr1 (Bit Score: 155; Significance: 3e-82; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 10 - 212
Target Start/End: Complemental strand, 20623235 - 20623033
Alignment:
| Q |
10 |
catcatcatggtttccaaatacactagcccaaggtatgcccctatttcttgctggagaggttgcttgatcccaatacaaacttgcatttccaatcattat |
109 |
Q |
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| T |
20623235 |
catcatcatggtttccgaatacactagcccaaggaatgcctcgatttcttgctggagaggttgcttgatcccaatacaaacttgcattttcaatcattat |
20623136 |
T |
|
| Q |
110 |
attgttagcagtaatgacatcaccaagatatattacaaaatctgtcatacagttaaactgattattatttggcattcgtggacatcgaaaaacataccac |
209 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||| |||||| | ||||| |||||||||||||| ||||| ||||| |||||||| |
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| T |
20623135 |
attgttagcagtaatgacatcaccaagatatattacaaaatctgtcatatagttaaccagattagtatttggcattcgtagacattgaaaatcataccac |
20623036 |
T |
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| Q |
210 |
tag |
212 |
Q |
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||| |
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| T |
20623035 |
tag |
20623033 |
T |
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