View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6414_high_1 (Length: 415)
Name: NF6414_high_1
Description: NF6414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6414_high_1 |
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Alignment Details
Target: chr3 (Bit Score: 198; Significance: 1e-108; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 198; E-Value: 1e-108
Query Start/End: Original strand, 7 - 276
Target Start/End: Original strand, 3619970 - 3620242
Alignment:
| Q |
7 |
gtgagatgaacatatgaaaaaattgattaactcatttgaaaatgtgaataaaccaacacatgataagaaaaacttttgtgaaagtactcttctctctttt |
106 |
Q |
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| T |
3619970 |
gtgagaagagcatatgaaaaaattgattaactcatttgaaaatgtgaataaaccaacacatgataagaaaagcttttgtgaaagtactggtctctctttt |
3620069 |
T |
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| Q |
107 |
taatttat---attttttcttaatccatgtcaattggtcaactaaatcggttattttggaatgaagagagtagtttttatgaaaataatttaacnnnnnn |
203 |
Q |
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| T |
3620070 |
taatttatatgatttttttttaatccatgtcaattggtcaactaaatcggttattttggaacgaagagagtagtttttatgaaaataatttaactttttt |
3620169 |
T |
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| Q |
204 |
naatcttttattagagaattagctttacgtaagcatttatcgtaataagcgtttatgaaaccatttatccata |
276 |
Q |
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| T |
3620170 |
caatcttttattatagaattagctttacataagtatttatcgtaataagcgtttatgaaaccatttatccata |
3620242 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 364 - 397
Target Start/End: Original strand, 3621088 - 3621121
Alignment:
| Q |
364 |
gtagttgagaaaattatggaaaactaggtatagt |
397 |
Q |
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| T |
3621088 |
gtagttgagaaaattatggaaaactaggtatagt |
3621121 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 274 - 307
Target Start/End: Original strand, 3620998 - 3621031
Alignment:
| Q |
274 |
ataaggaagttagtttattcaattctcaaaacca |
307 |
Q |
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| T |
3620998 |
ataaggaagttagttcattcaattctcaaaacca |
3621031 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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