View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6414_low_3 (Length: 352)
Name: NF6414_low_3
Description: NF6414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6414_low_3 |
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| [»] scaffold0443 (3 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 262; Significance: 1e-146; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 15 - 334
Target Start/End: Original strand, 25305505 - 25305825
Alignment:
| Q |
15 |
tcacactctctcttccttcttcaagttttaagttctttt-atcacttttctttatgttatatgtttctcttcatttccaatttttatagatctctcagtt |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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| T |
25305505 |
tcacactctctcttccttcttcaagttttaagttctttttatcacttttctttatgttatatgtttctcttcctttccaatttttatagatctctcagtt |
25305604 |
T |
|
| Q |
114 |
ctcagtttgaaatggttgtttagataccaatttgatgctgcgtcagcatgaaagctatgagcatatgttgaaaccgcaacggatatgttaccatcatagt |
213 |
Q |
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||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
25305605 |
ctcagtttgaaatggttgtttagataccaatttgatgctgcttcagcatgaaagctatgagcatatgttgaaactgcaacggatatgttaccatcatagt |
25305704 |
T |
|
| Q |
214 |
tgcaaccgctctgatgcggcggttccaagctctttgaatctgaatagtgactctccnnnnnnnnnnnnnccttcttcttctacacccgtatgtaaccacc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
25305705 |
tgcaaccgctctgatgcggcggttccaagctctttgaatctgaatagtgactctcctttttctttttttccttcttcttctacacccgtatgtaaccacc |
25305804 |
T |
|
| Q |
314 |
cgacccacccgctaaccgttc |
334 |
Q |
| |
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||||||||||||||||||||| |
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| T |
25305805 |
cgacccacccgctaaccgttc |
25305825 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 262; E-Value: 1e-146
Query Start/End: Original strand, 15 - 334
Target Start/End: Complemental strand, 25306347 - 25306027
Alignment:
| Q |
15 |
tcacactctctcttccttcttcaagttttaagttctttt-atcacttttctttatgttatatgtttctcttcatttccaatttttatagatctctcagtt |
113 |
Q |
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||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |
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|
| T |
25306347 |
tcacactctctcttccttcttcaagttttaagttctttttatcacttttctttatgttatatgtttctcttcctttccaatttttatagatctctcagtt |
25306248 |
T |
|
| Q |
114 |
ctcagtttgaaatggttgtttagataccaatttgatgctgcgtcagcatgaaagctatgagcatatgttgaaaccgcaacggatatgttaccatcatagt |
213 |
Q |
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|
||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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|
| T |
25306247 |
ctcagtttgaaatggttgtttagataccaatttgatgctgcttcagcatgaaagctatgagcatatgttgaaactgcaacggatatgttaccatcatagt |
25306148 |
T |
|
| Q |
214 |
tgcaaccgctctgatgcggcggttccaagctctttgaatctgaatagtgactctccnnnnnnnnnnnnnccttcttcttctacacccgtatgtaaccacc |
313 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |
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| T |
25306147 |
tgcaaccgctctgatgcggcggttccaagctctttgaatctgaatagtgactctcctttttctttttttccttcttcttctacacccgtatgtaaccacc |
25306048 |
T |
|
| Q |
314 |
cgacccacccgctaaccgttc |
334 |
Q |
| |
|
||||||||||||||||||||| |
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|
| T |
25306047 |
cgacccacccgctaaccgttc |
25306027 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 85; Significance: 2e-40; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 138 - 334
Target Start/End: Complemental strand, 21136179 - 21135979
Alignment:
| Q |
138 |
taccaatttgatgctgcgtcagcatgaaagctatgagcatatgttgaaaccgcaacggatatgttaccatcatagttgcaaccgctctgatgcggcggtt |
237 |
Q |
| |
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||||| ||||||||||| ||||| ||||||||||| ||||||||||||| ||||| | ||||||||||||| ||||||||||||||||||||||||||| |
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| T |
21136179 |
taccattttgatgctgcttcagcgtgaaagctatggccatatgttgaaactgcaacaggtatgttaccatcacagttgcaaccgctctgatgcggcggtt |
21136080 |
T |
|
| Q |
238 |
ccaagctctttgaatctgaatagtgactctcc----nnnnnnnnnnnnnccttcttcttctacacccgtatgtaaccacccgacccacccgctaaccgtt |
333 |
Q |
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||||| ||||||||| || ||||||||| ||| ||| ||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
21136079 |
ccaagttctttgaatatgtatagtgactatcctttttctttttttttttcctccttcttctacacccgtatgtaaccacccgacccacccgccaaccgtt |
21135980 |
T |
|
| Q |
334 |
c |
334 |
Q |
| |
|
| |
|
|
| T |
21135979 |
c |
21135979 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 58 - 86
Target Start/End: Complemental strand, 21136570 - 21136542
Alignment:
| Q |
58 |
cttttctttatgttatatgtttctcttca |
86 |
Q |
| |
|
||||||||||||||||||||||||||||| |
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| T |
21136570 |
cttttctttatgttatatgtttctcttca |
21136542 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0443 (Bit Score: 70; Significance: 2e-31; HSPs: 3)
Name: scaffold0443
Description:
Target: scaffold0443; HSP #1
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 75 - 265
Target Start/End: Complemental strand, 7413 - 7216
Alignment:
| Q |
75 |
tgtttctcttcatttccaatttttatagatctctcagttctcagtttgaaatggttgtttagat--------accaatttgatgctgcgtcagcatgaaa |
166 |
Q |
| |
|
||||||||||| || |||||||||||| || |||| |||||||||||||||||||| ||| ||| |||| ||||||||||| ||||| | ||| |
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| T |
7413 |
tgtttctcttccttcccaatttttatatatttctc-gttctcagtttgaaatggttttttggatcattttgtaccattttgatgctgcttcagcgttaaa |
7315 |
T |
|
| Q |
167 |
gctatgagcatatgttgaaaccgcaacggatatgttaccatcatagttgcaaccgctctgatgcggcggttccaagctctttgaatctgaatagtgact |
265 |
Q |
| |
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||||||| ||||||||||||| ||||| | ||||||||||||| |||||||||| |||| ||||| ||||| |||| ||||| ||| || ||||||||| |
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| T |
7314 |
gctatgaccatatgttgaaactgcaacaggtatgttaccatcacagttgcaaccactctaatgcgacggttacaagttctttaaatttgtatagtgact |
7216 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0443; HSP #2
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 289 - 334
Target Start/End: Complemental strand, 7187 - 7142
Alignment:
| Q |
289 |
tcttctacacccgtatgtaaccacccgacccacccgctaaccgttc |
334 |
Q |
| |
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|||||||||||||||||||||||||| |||||||||| |||||||| |
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| T |
7187 |
tcttctacacccgtatgtaaccacccaacccacccgccaaccgttc |
7142 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0443; HSP #3
Raw Score: 38; E-Value: 0.000000000002
Query Start/End: Original strand, 22 - 86
Target Start/End: Complemental strand, 7770 - 7705
Alignment:
| Q |
22 |
ctctcttccttcttcaagttttaagttctttt-atcacttttctttatgttatatgtttctcttca |
86 |
Q |
| |
|
||||||||||||||||| ||||| |||||||| | | |||||||||||||| |||||||||||||| |
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|
| T |
7770 |
ctctcttccttcttcaacttttatgttctttttaacgcttttctttatgttctatgtttctcttca |
7705 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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