View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6414_low_4 (Length: 334)

Name: NF6414_low_4
Description: NF6414
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6414_low_4
NF6414_low_4
[»] chr8 (9 HSPs)
chr8 (14-316)||(31040730-31041032)
chr8 (14-179)||(31076042-31076207)
chr8 (231-316)||(31075939-31076024)
chr8 (112-312)||(30647921-30648121)
chr8 (121-305)||(28865082-28865266)
chr8 (112-303)||(26088214-26088405)
chr8 (112-301)||(14726350-14726539)
chr8 (222-305)||(15329087-15329170)
chr8 (222-305)||(15509456-15509539)
[»] chr1 (1 HSPs)
chr1 (112-312)||(26087541-26087741)
[»] chr3 (2 HSPs)
chr3 (112-312)||(4818858-4819058)
chr3 (195-303)||(48730203-48730311)
[»] chr7 (2 HSPs)
chr7 (189-303)||(6612333-6612447)
chr7 (206-318)||(17294147-17294259)


Alignment Details
Target: chr8 (Bit Score: 291; Significance: 1e-163; HSPs: 9)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 291; E-Value: 1e-163
Query Start/End: Original strand, 14 - 316
Target Start/End: Complemental strand, 31041032 - 31040730
Alignment:
Q  14 cctgtggatgcttatttaagagctatgaatatgctccatatataatctaataaaattacaacttcaaacatgaacacaatgaatgatattgattacaaat 113  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31041032 cctgtggatgcttatttaagagctatgaatatgctccatatataatctaataaaattacaacttcaaacatgaacacaatgaatgatattgattacaaat 31040933  T
Q  114 tgaaggttgcagctcaagaaggtgatataaaccttctctatacactaattgaggaggatccatatgttttggaatatatagatttaataccatttgttga 213  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  31040932 tgaaggttgcagctcaagaaggtgatataaaccttctctatacactaattgaggaggatccatatgttttggaatatatagatttaattccatttgttga 31040833  T
Q  214 aactcctctacatatagctgcatctatgggacatgctcaatttgccactgaaattatgagattgaaaccttcatttgcatggaagctaaatcaacaaggg 313  Q
    ||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  31040832 aactcctctgcatatagctgcatctatgggacatgttcaatttgccactgaaattatgagattgaaaccttcatttgcatggaagctaaatcaacaaggg 31040733  T
Q  314 ttc 316  Q
    |||    
T  31040732 ttc 31040730  T

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Target: chr8; HSP #2
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 14 - 179
Target Start/End: Complemental strand, 31076207 - 31076042
Alignment:
Q  14 cctgtggatgcttatttaagagctatgaatatgctccatatataatctaataaaattacaacttcaaacatgaacacaatgaatgatattgattacaaat 113  Q
    |||||||||||||||||||||| | ||||||||| ||| || |||||||||| ||||| | |||||||||||||| ||| ||||||||||  | ||||      
T  31076207 cctgtggatgcttatttaagagatgtgaatatgccccaaatctaatctaatataattaaagcttcaaacatgaacgcaaggaatgatattattgacaagg 31076108  T
Q  114 tgaaggttgcagctcaagaaggtgatataaaccttctctatacactaattgaggaggatccatatg 179  Q
    ||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||    
T  31076107 tgaagtttgcagctcaagaaggtgatataaaccttctttatacactaattgaggaggatccatatg 31076042  T

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Target: chr8; HSP #3
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 231 - 316
Target Start/End: Complemental strand, 31076024 - 31075939
Alignment:
Q  231 ctgcatctatgggacatgctcaatttgccactgaaattatgagattgaaaccttcatttgcatggaagctaaatcaacaagggttc 316  Q
    |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||||||||    
T  31076024 ctgcatctatgggacatgttcaatttgccactgaaattatgagattgaaaccttcatttgctttgaagctaaatcaacaagggttc 31075939  T

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Target: chr8; HSP #4
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 112 - 312
Target Start/End: Original strand, 30647921 - 30648121
Alignment:
Q  112 attgaaggttgcagctcaagaaggtgatataaaccttctctatacactaattgaggaggatccatatgttttggaatatatagatttaataccatttgtt 211  Q
    |||||| | ||||||| ||| |||||||||| | || ||||| ||| ||||| | || ||||||||  |||||||  ||||||||| |||||||||||||    
T  30647921 attgaatgctgcagctgaagcaggtgatatagatctcctctacacagtaattcaagatgatccatacattttggagcatatagattcaataccatttgtt 30648020  T
Q  212 gaaactcctctacatatagctgcatctatgggacatgctcaatttgccactgaaattatgagattgaaaccttcatttgcatggaagctaaatcaacaag 311  Q
    ||||||||| ||||||| |||||||| ||||| |||  | | ||||||| |||||||||||  ||||||||||||||||| | |||| |||||| |||||    
T  30648021 gaaactcctttacatattgctgcatccatgggtcatattgactttgccattgaaattatgaatttgaaaccttcatttgctttgaagttaaatccacaag 30648120  T
Q  312 g 312  Q
    |    
T  30648121 g 30648121  T

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Target: chr8; HSP #5
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 121 - 305
Target Start/End: Original strand, 28865082 - 28865266
Alignment:
Q  121 tgcagctcaagaaggtgatataaaccttctctatacactaattgaggaggatccatatgttttggaatatatagatttaataccatttgttgaaactcct 220  Q
    ||||||||| | ||||||| |||| || ||||| ||| ||||| | || |||||||| ||||||||   |||||||||||||||||||||||||||||||    
T  28865082 tgcagctcatgcaggtgatgtaaatctcctctacacagtaattcaagatgatccatacgttttggagcgtatagatttaataccatttgttgaaactcct 28865181  T
Q  221 ctacatatagctgcatctatgggacatgctcaatttgccactgaaattatgagattgaaaccttcatttgcatggaagctaaatc 305  Q
     ||||||| |||||||||||||| ||   ||  ||||||||||| |||||||  ||||||||||| ||||| |  ||||||||||    
T  28865182 ttacatatcgctgcatctatgggtcaccttccttttgccactgagattatgacgttgaaaccttcgtttgccttaaagctaaatc 28865266  T

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Target: chr8; HSP #6
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 112 - 303
Target Start/End: Original strand, 26088214 - 26088405
Alignment:
Q  112 attgaaggttgcagctcaagaaggtgatataaaccttctctatacactaattgaggaggatccatatgttttggaatatatagatttaataccatttgtt 211  Q
    |||||| | ||||||||||  |||||||||| | || |||||  || ||||| | || |||||||   |||||||  |||||||| ||||| ||||||||    
T  26088214 attgaaagctgcagctcaaacaggtgatatagatctcctctactcagtaattcaagatgatccatccattttggagaatatagatgtaatatcatttgtt 26088313  T
Q  212 gaaactcctctacatatagctgcatctatgggacatgctcaatttgccactgaaattatgagattgaaaccttcatttgcatggaagctaaa 303  Q
    ||||||||| ||||||| ||||||||| |||| |||   |  ||||||| |||||||||||  || ||||||||||||||||||||||||||    
T  26088314 gaaactcctttacatattgctgcatctttgggtcatatgccgtttgccaatgaaattatgaatttaaaaccttcatttgcatggaagctaaa 26088405  T

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Target: chr8; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 112 - 301
Target Start/End: Original strand, 14726350 - 14726539
Alignment:
Q  112 attgaaggttgcagctcaagaaggtgatataaaccttctctatacactaattgaggaggatccatatgttttggaatatatagatttaataccatttgtt 211  Q
    |||||| | |||||||| |  |||||||||| | || ||||| ||| ||||| | || |||||||   |||||||  |||||||||||||| | ||||||    
T  14726350 attgaaagctgcagctctaacaggtgatatagatctcctctacacagtaattcaagatgatccatccattttggagcatatagatttaataacttttgtt 14726449  T
Q  212 gaaactcctctacatatagctgcatctatgggacatgctcaatttgccactgaaattatgagattgaaaccttcatttgcatggaagcta 301  Q
    ||||||||| ||||||  |||||||||||||| |||   |  |||||||||||| ||||||  || |||||||||||||| |||||||||    
T  14726450 gaaactcctttacatactgctgcatctatgggtcatctccggtttgccactgaagttatgaatttaaaaccttcatttgcttggaagcta 14726539  T

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Target: chr8; HSP #8
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 305
Target Start/End: Original strand, 15329087 - 15329170
Alignment:
Q  222 tacatatagctgcatctatgggacatgctcaatttgccactgaaattatgagattgaaaccttcatttgcatggaagctaaatc 305  Q
    ||||||| |||||||||||||| ||   ||| ||||||||||| |||||||  ||||||||||| ||||| |  ||||||||||    
T  15329087 tacatatcgctgcatctatgggtcaccttcattttgccactgagattatgacgttgaaaccttcgtttgctttaaagctaaatc 15329170  T

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Target: chr8; HSP #9
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 305
Target Start/End: Original strand, 15509456 - 15509539
Alignment:
Q  222 tacatatagctgcatctatgggacatgctcaatttgccactgaaattatgagattgaaaccttcatttgcatggaagctaaatc 305  Q
    ||||||| |||||||||||||| ||   ||| ||||||||||| |||||||  ||||||||||| ||||| |  ||||||||||    
T  15509456 tacatatcgctgcatctatgggtcaccttcattttgccactgagattatgacgttgaaaccttcgtttgctttaaagctaaatc 15509539  T

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Target: chr1 (Bit Score: 85; Significance: 2e-40; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 85; E-Value: 2e-40
Query Start/End: Original strand, 112 - 312
Target Start/End: Complemental strand, 26087741 - 26087541
Alignment:
Q  112 attgaaggttgcagctcaagaaggtgatataaaccttctctatacactaattgaggaggatccatatgttttggaatatatagatttaataccatttgtt 211  Q
    |||||| | ||||||| ||| |||||||||| | || ||||| ||| ||||| | || ||||||||  |||||||   ||||||||||||||||||||||    
T  26087741 attgaaaggtgcagctgaagcaggtgatatagatctcctctacacagtaattcaagatgatccatacattttggagcgtatagatttaataccatttgtt 26087642  T
Q  212 gaaactcctctacatatagctgcatctatgggacatgctcaatttgccactgaaattatgagattgaaaccttcatttgcatggaagctaaatcaacaag 311  Q
    ||||||||| ||||||  |||||||||||||| |||  |||||||||||||||||||||||  ||||||||||||| ||| ||||| |||||||| ||||    
T  26087641 gaaactcctttacatacggctgcatctatgggtcatcttcaatttgccactgaaattatgaatttgaaaccttcatatgcttggaaactaaatcagcaag 26087542  T
Q  312 g 312  Q
    |    
T  26087541 g 26087541  T

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Target: chr3 (Bit Score: 69; Significance: 6e-31; HSPs: 2)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 69; E-Value: 6e-31
Query Start/End: Original strand, 112 - 312
Target Start/End: Original strand, 4818858 - 4819058
Alignment:
Q  112 attgaaggttgcagctcaagaaggtgatataaaccttctctatacactaattgaggaggatccatatgttttggaatatatagatttaataccatttgtt 211  Q
    |||||| | ||||||| ||| |||||||||| | || || |||||| ||||| | || |||||||   |||||||    |||||||||||||||||||||    
T  4818858 attgaatggtgcagctgaagcaggtgatatagatctcctttatacagtaattcaagatgatccattcattttggagatgatagatttaataccatttgtt 4818957  T
Q  212 gaaactcctctacatatagctgcatctatgggacatgctcaatttgccactgaaattatgagattgaaaccttcatttgcatggaagctaaatcaacaag 311  Q
    ||||||||| | ||||| |||||||||||||| |||   ||||||||| | || |||||||  || |||||||||||||| |||||||||||||||||||    
T  4818958 gaaactcctttgcatattgctgcatctatgggtcatctccaatttgcctccgagattatgaagttaaaaccttcatttgcttggaagctaaatcaacaag 4819057  T
Q  312 g 312  Q
    |    
T  4819058 g 4819058  T

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Target: chr3; HSP #2
Raw Score: 37; E-Value: 0.000000000008
Query Start/End: Original strand, 195 - 303
Target Start/End: Complemental strand, 48730311 - 48730203
Alignment:
Q  195 atttaataccatttgttgaaactcctctacatatagctgcatctatgggacatgctcaatttgccactgaaattatgagattgaaaccttcatttgcatg 294  Q
    ||||||||||||||||||| |||||| | ||||| |||||| ||   |||||| |    ||||||||||| ||||||||| | |||||||||||||| ||    
T  48730311 atttaataccatttgttgatactcctttgcatattgctgcagcttctggacatacaagttttgccactgagattatgagactaaaaccttcatttgcttg 48730212  T
Q  295 gaagctaaa 303  Q
    ||| |||||    
T  48730211 gaaactaaa 48730203  T

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Target: chr7 (Bit Score: 59; Significance: 6e-25; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 59; E-Value: 6e-25
Query Start/End: Original strand, 189 - 303
Target Start/End: Complemental strand, 6612447 - 6612333
Alignment:
Q  189 atatagatttaataccatttgttgaaactcctctacatatagctgcatctatgggacatgctcaatttgccactgaaattatgagattgaaaccttcatt 288  Q
    |||||||||  ||||||||||||||||||||| |||||||| |||||  |||||| |||   |||||||| |||||||||||||  ||||||||||||||    
T  6612447 atatagattcgataccatttgttgaaactcctttacatatatctgcagatatgggtcatctccaatttgctactgaaattatgatgttgaaaccttcatt 6612348  T
Q  289 tgcatggaagctaaa 303  Q
    ||| |||||||||||    
T  6612347 tgcttggaagctaaa 6612333  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 206 - 318
Target Start/End: Complemental strand, 17294259 - 17294147
Alignment:
Q  206 tttgttgaaactcctctacatatagctgcatctatgggacatgctcaatttgccactgaaattatgagattgaaaccttcatttgcatggaagctaaatc 305  Q
    ||||||||||||||| | ||||| || ||||||| ||| |||  ||  |||||||  ||  ||||||  ||||||||||||||||| |||||||||||||    
T  17294259 tttgttgaaactcctttgcatatcgccgcatctagggggcatcttcggtttgccatcgaggttatgaatttgaaaccttcatttgcttggaagctaaatc 17294160  T
Q  306 aacaagggttctg 318  Q
      ||||| |||||    
T  17294159 cgcaaggattctg 17294147  T

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