View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6415_high_1 (Length: 416)
Name: NF6415_high_1
Description: NF6415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6415_high_1 |
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Alignment Details
Target: chr4 (Bit Score: 384; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 384; E-Value: 0
Query Start/End: Original strand, 14 - 401
Target Start/End: Complemental strand, 42799140 - 42798753
Alignment:
| Q |
14 |
gatgaacttgacaatggatcgtttcattcttttcaggtttatgaggatgaaccagtccttcaagcatttaaagagatgaggaaaaagagggttggagggg |
113 |
Q |
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| T |
42799140 |
gatgaacttgacaatggatcgtttcattcttttcaggtttatgaggatgaaccagtccttcaagcatttaaagagatgaggaaaaagagggttggagggg |
42799041 |
T |
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| Q |
114 |
tgcctgtaatcaaaagaggtggcaccacggcagttggtaatataagcttgcgagatgttcaattcttgctaactgctccagaaatctatcatgattatag |
213 |
Q |
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| T |
42799040 |
tgcctgtaatcaaaagaggtggcaccacggcagttggtaatataagcttgcgagatgttcaattcttgctaactgctccagaaatctatcatgattatag |
42798941 |
T |
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| Q |
214 |
gtatgtcagaggttttaaattgtgattcgcagttgcgccacagtccttgatattgctgagaaatgttgtcaaatatggctgatgcgacctcaatcacggt |
313 |
Q |
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| T |
42798940 |
gtatgtcagaggttttaaattgtgattcgcagttgcgccacagtccttgatattgctgagaaatgttgtcaaatatggctgatgcgacctcaatcacggt |
42798841 |
T |
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| Q |
314 |
cagagacatcaaaatccttgtgtcacgacctgaactgtggacgcggaccttttattaaaactgtgtttagaccgcattgctgatatct |
401 |
Q |
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| T |
42798840 |
cagagacatcaaaaaccttgtgtcacgacctgaactgtggacgcggaccttttattaaaactgtgtttagaccgcattgctgatatct |
42798753 |
T |
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