View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6415_high_2 (Length: 406)
Name: NF6415_high_2
Description: NF6415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6415_high_2 |
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Alignment Details
Target: chr3 (Bit Score: 340; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 340; E-Value: 0
Query Start/End: Original strand, 15 - 366
Target Start/End: Original strand, 48258561 - 48258912
Alignment:
| Q |
15 |
atcatcatgtcattggatgtcttgaagaatgcttagttgctatttggcttacaatatagatcattttgttcctacaggtagaacatgttagagctgagag |
114 |
Q |
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| T |
48258561 |
atcatcatgtcattggatgtcttgaagaatgcttagttgctattttgcttacaatatagatcattttgttcctacaggtagaacatgttagagctgagag |
48258660 |
T |
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| Q |
115 |
gaacttactggccgaagtcgccagtcactgcattgtgaaactttactactcatttcaagatgctgaatacttgtatttaattatggagtatctgcccggg |
214 |
Q |
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| T |
48258661 |
gaacttactggccgaagtcgccagtcactgcattgtgaaactttactactcatttcaagatactgaatacttgtatttaattatggagtatctgcccggg |
48258760 |
T |
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| Q |
215 |
ggtgacatcatgactctgcttatgagggaagataccttaagtgagaacgtggctagattttacatggcacagagtgttctggccatagagtctattcata |
314 |
Q |
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| T |
48258761 |
ggtgacatcatgactctgcttatgagggaagacaccttaagtgagaacgtggctagattttacatggcacagagtgttctggccatagagtctattcata |
48258860 |
T |
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| Q |
315 |
agcacaattacattcacaggtttagtttggctctgcctatgaaagctgttgg |
366 |
Q |
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| T |
48258861 |
agcacaattacattcacaggtttagtttggctctgcctatgaaagctgttgg |
48258912 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 53; Significance: 3e-21; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 98 - 330
Target Start/End: Original strand, 17609784 - 17610016
Alignment:
| Q |
98 |
catgttagagctgagaggaacttactggccgaagtcgccagtcactgcattgtgaaactttactactcatttcaagatgctgaatacttgtatttaatta |
197 |
Q |
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| T |
17609784 |
catgttagagctgaaaggaatgtacttgcagaagttgcgaatgactgcattgtgaaactttattactcatttcaagatcctgaattcttatatcttataa |
17609883 |
T |
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| Q |
198 |
tggagtatctgcccgggggtgacatcatgactctgcttatgagggaagataccttaagtgagaacgtggctagattttacatggcacagagtgttctggc |
297 |
Q |
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| T |
17609884 |
tggaatatttacctggtggcgatataatgactttgttgatgagggaagaaactttgacagaaagtgtggcaagattttacatcgcccaaaccgttttggc |
17609983 |
T |
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| Q |
298 |
catagagtctattcataagcacaattacattca |
330 |
Q |
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| T |
17609984 |
catcgagtctattcataaacacaattacgttca |
17610016 |
T |
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