View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6415_high_4 (Length: 252)

Name: NF6415_high_4
Description: NF6415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6415_high_4
NF6415_high_4
[»] chr8 (2 HSPs)
chr8 (163-252)||(38699219-38699309)
chr8 (166-252)||(34363809-34363900)
[»] chr3 (3 HSPs)
chr3 (81-158)||(16362527-16362604)
chr3 (81-123)||(16359730-16359772)
chr3 (163-242)||(33968246-33968327)
[»] chr6 (2 HSPs)
chr6 (163-242)||(25371234-25371316)
chr6 (81-123)||(32220910-32220952)
[»] chr5 (1 HSPs)
chr5 (163-252)||(6804956-6805049)
[»] chr7 (3 HSPs)
chr7 (170-250)||(24995924-24996005)
chr7 (163-242)||(23624409-23624492)
chr7 (185-252)||(24996566-24996636)
[»] chr4 (1 HSPs)
chr4 (163-242)||(34155526-34155609)
[»] chr2 (2 HSPs)
chr2 (81-123)||(43619451-43619493)
chr2 (163-204)||(15602762-15602803)


Alignment Details
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 163 - 252
Target Start/End: Complemental strand, 38699309 - 38699219
Alignment:
Q  163 atcaattgaagaagataatctaatagtagattatcaacactaatttttt---cacactctttcaccaccattctctctcttccctccatcccc 252  Q
    ||||||||||||| |||||||||||||||||||||||||||||||||||   ||| |||||||||||||||  ||||||||||||||||||||    
T  38699309 atcaattgaagaacataatctaatagtagattatcaacactaatttttttcacactctctttcaccaccat--tctctcttccctccatcccc 38699219  T

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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 252
Target Start/End: Complemental strand, 34363900 - 34363809
Alignment:
Q  166 aattgaagaagataatctaatagtagattatcaacacta---attttttcacactc--tttcaccaccattctctctcttccctccatcccc 252  Q
    |||||||||| ||||||||||| |||| |||||||||||    |||||||| ||||  ||||||||||||| |||||| |||||||||||||    
T  34363900 aattgaagaacataatctaataatagactatcaacactagattttttttcatactctatttcaccaccattatctctcctccctccatcccc 34363809  T

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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 81 - 158
Target Start/End: Original strand, 16362527 - 16362604
Alignment:
Q  81 tgatgacctgttgtagcaggtcatataaggaggttcattggtgaaccnnnnnnnngggggtccatgttagggggcacc 158  Q
    ||||||||||||||||||||||||||||||||||||||||||| |||        |||||||||||||||||||||||    
T  16362527 tgatgacctgttgtagcaggtcatataaggaggttcattggtggaccttttttttgggggtccatgttagggggcacc 16362604  T

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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 16359772 - 16359730
Alignment:
Q  81 tgatgacctgttgtagcaggtcatataaggaggttcattggtg 123  Q
    |||||||||||||||||||||||||||||||||||||||||||    
T  16359772 tgatgacctgttgtagcaggtcatataaggaggttcattggtg 16359730  T

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Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 163 - 242
Target Start/End: Original strand, 33968246 - 33968327
Alignment:
Q  163 atcaattgaagaagataatctaatagtagattatcaacactaattttttcacac--tctttcaccaccattctctctcttcc 242  Q
    ||||||||||||| |||||||||||||||| ||||||| |||  ||||||||||  ||| |||||| |||||||||||||||    
T  33968246 atcaattgaagaacataatctaatagtagactatcaacgctagatttttcacactatctctcaccatcattctctctcttcc 33968327  T

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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 163 - 242
Target Start/End: Original strand, 25371234 - 25371316
Alignment:
Q  163 atcaattgaagaagataatctaatagtagattatcaacacta-attttttcacac--tctttcaccaccattctctctcttcc 242  Q
    ||||||||||||| |||||||||||||||| ||||||||||| ||||||||||||  ||| |||||| |||||||||||||||    
T  25371234 atcaattgaagaatataatctaatagtagactatcaacactagattttttcacactatctctcaccatcattctctctcttcc 25371316  T

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Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 32220952 - 32220910
Alignment:
Q  81 tgatgacctgttgtagcaggtcatataaggaggttcattggtg 123  Q
    |||||||| |||||||||||||||| ||| |||||||||||||    
T  32220952 tgatgaccggttgtagcaggtcatacaagaaggttcattggtg 32220910  T

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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 163 - 252
Target Start/End: Original strand, 6804956 - 6805049
Alignment:
Q  163 atcaattgaagaagataatctaatagtagattatcaacacta-att-ttttcacactct--ttcaccaccattctctctcttccctccatcccc 252  Q
    ||||| ||||||| ||||||||| |||||| ||||||||||| ||| ||||||||||||  ||||||||||||||||||| |||||||||||||    
T  6804956 atcaaatgaagaacataatctaacagtagactatcaacactagattattttcacactctctttcaccaccattctctctcctccctccatcccc 6805049  T

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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 170 - 250
Target Start/End: Original strand, 24995924 - 24996005
Alignment:
Q  170 gaagaagataatctaatagtagattatcaacacta-attttttcacactctttcaccaccattctctctcttccctccatcc 250  Q
    |||||| ||||||||||||||   ||||||||||| ||||||||| ||||| |||||||||||||||||| |||||||||||    
T  24995924 gaagaacataatctaatagtaatctatcaacactagattttttcatactctctcaccaccattctctctcctccctccatcc 24996005  T

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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 163 - 242
Target Start/End: Complemental strand, 23624492 - 23624409
Alignment:
Q  163 atcaattgaagaagataatctaatagtagattatcaacactaa--ttttttcacac--tctttcaccaccattctctctcttcc 242  Q
    ||||||||||||| |||||||||||||| | |||||||| |||  |||||||||||  ||| ||||||||||||||||||||||    
T  23624492 atcaattgaagaacataatctaatagtaaactatcaacaataaatttttttcacactatctctcaccaccattctctctcttcc 23624409  T

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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 185 - 252
Target Start/End: Complemental strand, 24996636 - 24996566
Alignment:
Q  185 atagtagattatcaacacta-attttttcacactct--ttcaccaccattctctctcttccctccatcccc 252  Q
    |||||||| ||||||||||| ||||||||| |||||  ||||||||||||||||||| |||||||||||||    
T  24996636 atagtagactatcaacactagattttttcatactctctttcaccaccattctctctcctccctccatcccc 24996566  T

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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 242
Target Start/End: Complemental strand, 34155609 - 34155526
Alignment:
Q  163 atcaattgaagaagataatctaatagtagattatcaacact--aattttttcacac--tctttcaccaccattctctctcttcc 242  Q
    ||||||||||||| |||||||||| ||||| ||||||||||  | |||||||||||  ||| |||||| |||||||||||||||    
T  34155609 atcaattgaagaacataatctaatggtagactatcaacactagatttttttcacactatctctcaccatcattctctctcttcc 34155526  T

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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 43619493 - 43619451
Alignment:
Q  81 tgatgacctgttgtagcaggtcatataaggaggttcattggtg 123  Q
    |||||| | ||||||||||||||||||||||||||||||||||    
T  43619493 tgatgatcggttgtagcaggtcatataaggaggttcattggtg 43619451  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 204
Target Start/End: Complemental strand, 15602803 - 15602762
Alignment:
Q  163 atcaattgaagaagataatctaatagtagattatcaacacta 204  Q
    |||| |||||||| |||||||||||||||| |||||||||||    
T  15602803 atcatttgaagaacataatctaatagtagactatcaacacta 15602762  T

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