View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6415_low_1 (Length: 563)
Name: NF6415_low_1
Description: NF6415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6415_low_1 |
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Alignment Details
Target: chr2 (Bit Score: 510; Significance: 0; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 510; E-Value: 0
Query Start/End: Original strand, 9 - 546
Target Start/End: Original strand, 7882416 - 7882953
Alignment:
| Q |
9 |
acatcatcattctccagctctaatttcacaagcacaaagcttccacttccaaggtctcaattttcaattctaccaaccattcaaaatgttgaacaaaaca |
108 |
Q |
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| T |
7882416 |
acatcatcgttcaccagctctaatttcacaagcacaaagcttccacttccaaggtctcaattttcaattctaccaaccattcaaaatgttgaacaaaaca |
7882515 |
T |
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| Q |
109 |
tgagtctccatttactctcttccaagaaacctctctacctttcatccactcaaaattttgcattgctaacaaaacccaaaagaaagaatgtgacagaatg |
208 |
Q |
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| T |
7882516 |
tgagtctccctttactctcttccaagaaacctctctacctttcatccactcaaaattttgcattgctaacaaaacccaaaagaaagaatgtgacagaatg |
7882615 |
T |
|
| Q |
209 |
tcaagcctatgaggctgatagatcaagaccactagagattaacattgaacttcctagtgaagaagcagctcaaaagcttaagattggattgtattttgct |
308 |
Q |
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| T |
7882616 |
tcaagcctatgaggctgatagatcaagaccactagagattaacattgaacttcctagtgaagaagcagctcaaaagcttaagattggattgtattttgct |
7882715 |
T |
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| Q |
309 |
acttggtgtgctttgaatgttgttttcaacatatacaacaagaaagttttgaatgcttttccttacccttggcttacttccactttgtccttagctgctg |
408 |
Q |
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| T |
7882716 |
acttggtgggctttgaatgttgttttcaacatatacaacaagaaagttttgaatgcttttccttacccttggcttacttccactttgtccttagctgctg |
7882815 |
T |
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| Q |
409 |
gttctctcatgatgttaatctcatgggctactagggttgctgaggccccaaaagttaacttggatttctggaaagctctttttcctgtaagaaaaatcac |
508 |
Q |
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| T |
7882816 |
gttctctcatgatgttaatttcatgggctactagggttgctgaggccccaaaagttaacttggatttctggaaagctctttttcctgtaagaaaaatcac |
7882915 |
T |
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| Q |
509 |
catatttccatttcattctaattattttcactttttac |
546 |
Q |
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| T |
7882916 |
cacatttccttttcattctaattattttcactttttac |
7882953 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 125; Significance: 4e-64; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 271 - 499
Target Start/End: Original strand, 54984783 - 54985011
Alignment:
| Q |
271 |
aagcagctcaaaagcttaagattggattgtattttgctacttggtgtgctttgaatgttgttttcaacatatacaacaagaaagttttgaatgcttttcc |
370 |
Q |
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||||||||||||| || || ||||| ||||||||||| || ||||| ||||||||||| |||||||| || ||||||||||| ||||||||||||||||| |
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| T |
54984783 |
aagcagctcaaaaactcaaaattggtttgtattttgcaacatggtgggctttgaatgtggttttcaatatttacaacaagaaggttttgaatgcttttcc |
54984882 |
T |
|
| Q |
371 |
ttacccttggcttacttccactttgtccttagctgctggttctctcatgatgttaatctcatgggctactagggttgctgaggccccaaaagttaacttg |
470 |
Q |
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| T |
54984883 |
ttatccttggcttacttccactttgtcccttgctgctggttctctcatcatgttaatctcatgggccacaagggttgctgaagcccctaaagttaatttg |
54984982 |
T |
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| Q |
471 |
gatttctggaaagctctttttcctgtaag |
499 |
Q |
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| T |
54984983 |
gagttttggaaggccttgtttcctgtaag |
54985011 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 56; Significance: 6e-23; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 56; E-Value: 6e-23
Query Start/End: Original strand, 300 - 451
Target Start/End: Original strand, 18395113 - 18395264
Alignment:
| Q |
300 |
tattttgctacttggtgtgctttgaatgttgttttcaacatatacaacaagaaagttttgaatgcttttccttacccttggcttacttccactttgtcct |
399 |
Q |
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|||||||| |||||||| |||||||||||||| || || || ||||||||||| ||||||||||||| ||||||||||||||||| || ||| | || |
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| T |
18395113 |
tattttgcaacttggtgggctttgaatgttgtgtttaatatttacaacaagaaggttttgaatgcttacccttacccttggcttacatcaactctctcac |
18395212 |
T |
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| Q |
400 |
tagctgctggttctctcatgatgttaatctcatgggctactagggttgctga |
451 |
Q |
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| T |
18395213 |
ttgcttgtggctctcttatgatgttgatctcttgggccactaggattgctga |
18395264 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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