View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6415_low_4 (Length: 359)
Name: NF6415_low_4
Description: NF6415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6415_low_4 |
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Alignment Details
Target: chr8 (Bit Score: 329; Significance: 0; HSPs: 3)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 329; E-Value: 0
Query Start/End: Original strand, 1 - 341
Target Start/End: Complemental strand, 38699168 - 38698828
Alignment:
| Q |
1 |
tcaaacttcttagactaaattctgcagtttttaattctgataattaaatttagttgaaatgcttcaaaatgaacacataaattctttacatgtcatttca |
100 |
Q |
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| T |
38699168 |
tcaaacttcttagactaaattctgtagtttttaattctgataattaaatttagttgaaatgcttcaaaatgaacacataaattctttacatgtcatttca |
38699069 |
T |
|
| Q |
101 |
aattcaactaatgaaacatgcacatgtatttaacagatcgaataagcagtttgaaaatcataaatccaatagtcaaaccaaatcagtttgaatttaaaca |
200 |
Q |
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| T |
38699068 |
aattcaactaatgaaacatgcacatgtatttaacagatcgaataagcagtttgaaaatcataaatccaatagtcaaatcaaatcagttttaatttaaaca |
38698969 |
T |
|
| Q |
201 |
aattgatttgggttgaaaccaaactaaaacacgttcagacgaatcacaatttgaattggttttgttcttcatgggatcgaacaaaacaaataccgtaaac |
300 |
Q |
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| T |
38698968 |
aattgatttgggttgaaaccaaactaaaacacgttcagacgaatcacaatttgaattggttttgttcttcatgggatcgaacaaaacaaataccgtaaac |
38698869 |
T |
|
| Q |
301 |
tccgactcagttatcacaatttgaattgattttgttagtca |
341 |
Q |
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| T |
38698868 |
tccgactcagttatcacaatttgaattgattttgttagtca |
38698828 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 179 - 256
Target Start/End: Original strand, 36947693 - 36947770
Alignment:
| Q |
179 |
caaatcagtttgaatttaaacaaattgatttgggttgaaaccaaactaaaacacgttcagacgaatcacaatttgaat |
256 |
Q |
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| T |
36947693 |
caaatcagtttgaatttaaacaaattgatttaggttgaatccaaactaaaacacgttgaggtaaatcacaatttgaat |
36947770 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 276 - 310
Target Start/End: Original strand, 36947769 - 36947803
Alignment:
| Q |
276 |
atcgaacaaaacaaataccgtaaactccgactcag |
310 |
Q |
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| T |
36947769 |
atcgaacaaaacaaataccgtaaactccgactcag |
36947803 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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