View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6415_low_6 (Length: 252)
Name: NF6415_low_6
Description: NF6415
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6415_low_6 |
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| [»] chr8 (2 HSPs) |
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| [»] chr5 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 60; Significance: 1e-25; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 163 - 252
Target Start/End: Complemental strand, 38699309 - 38699219
Alignment:
| Q |
163 |
atcaattgaagaagataatctaatagtagattatcaacactaatttttt---cacactctttcaccaccattctctctcttccctccatcccc |
252 |
Q |
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| T |
38699309 |
atcaattgaagaacataatctaatagtagattatcaacactaatttttttcacactctctttcaccaccat--tctctcttccctccatcccc |
38699219 |
T |
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Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 166 - 252
Target Start/End: Complemental strand, 34363900 - 34363809
Alignment:
| Q |
166 |
aattgaagaagataatctaatagtagattatcaacacta---attttttcacactc--tttcaccaccattctctctcttccctccatcccc |
252 |
Q |
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| T |
34363900 |
aattgaagaacataatctaataatagactatcaacactagattttttttcatactctatttcaccaccattatctctcctccctccatcccc |
34363809 |
T |
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Target: chr3 (Bit Score: 50; Significance: 1e-19; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 81 - 158
Target Start/End: Original strand, 16362527 - 16362604
Alignment:
| Q |
81 |
tgatgacctgttgtagcaggtcatataaggaggttcattggtgaaccnnnnnnnngggggtccatgttagggggcacc |
158 |
Q |
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| T |
16362527 |
tgatgacctgttgtagcaggtcatataaggaggttcattggtggaccttttttttgggggtccatgttagggggcacc |
16362604 |
T |
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Target: chr3; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 16359772 - 16359730
Alignment:
| Q |
81 |
tgatgacctgttgtagcaggtcatataaggaggttcattggtg |
123 |
Q |
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| T |
16359772 |
tgatgacctgttgtagcaggtcatataaggaggttcattggtg |
16359730 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 163 - 242
Target Start/End: Original strand, 33968246 - 33968327
Alignment:
| Q |
163 |
atcaattgaagaagataatctaatagtagattatcaacactaattttttcacac--tctttcaccaccattctctctcttcc |
242 |
Q |
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| T |
33968246 |
atcaattgaagaacataatctaatagtagactatcaacgctagatttttcacactatctctcaccatcattctctctcttcc |
33968327 |
T |
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Target: chr6 (Bit Score: 48; Significance: 2e-18; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 163 - 242
Target Start/End: Original strand, 25371234 - 25371316
Alignment:
| Q |
163 |
atcaattgaagaagataatctaatagtagattatcaacacta-attttttcacac--tctttcaccaccattctctctcttcc |
242 |
Q |
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||||||||||||| |||||||||||||||| ||||||||||| |||||||||||| ||| |||||| ||||||||||||||| |
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| T |
25371234 |
atcaattgaagaatataatctaatagtagactatcaacactagattttttcacactatctctcaccatcattctctctcttcc |
25371316 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 32220952 - 32220910
Alignment:
| Q |
81 |
tgatgacctgttgtagcaggtcatataaggaggttcattggtg |
123 |
Q |
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| T |
32220952 |
tgatgaccggttgtagcaggtcatacaagaaggttcattggtg |
32220910 |
T |
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Target: chr5 (Bit Score: 47; Significance: 6e-18; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 163 - 252
Target Start/End: Original strand, 6804956 - 6805049
Alignment:
| Q |
163 |
atcaattgaagaagataatctaatagtagattatcaacacta-att-ttttcacactct--ttcaccaccattctctctcttccctccatcccc |
252 |
Q |
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||||| ||||||| ||||||||| |||||| ||||||||||| ||| |||||||||||| ||||||||||||||||||| ||||||||||||| |
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| T |
6804956 |
atcaaatgaagaacataatctaacagtagactatcaacactagattattttcacactctctttcaccaccattctctctcctccctccatcccc |
6805049 |
T |
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Target: chr7 (Bit Score: 46; Significance: 2e-17; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 46; E-Value: 2e-17
Query Start/End: Original strand, 170 - 250
Target Start/End: Original strand, 24995924 - 24996005
Alignment:
| Q |
170 |
gaagaagataatctaatagtagattatcaacacta-attttttcacactctttcaccaccattctctctcttccctccatcc |
250 |
Q |
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|||||| |||||||||||||| ||||||||||| ||||||||| ||||| |||||||||||||||||| ||||||||||| |
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| T |
24995924 |
gaagaacataatctaatagtaatctatcaacactagattttttcatactctctcaccaccattctctctcctccctccatcc |
24996005 |
T |
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Target: chr7; HSP #2
Raw Score: 42; E-Value: 0.000000000000006
Query Start/End: Original strand, 163 - 242
Target Start/End: Complemental strand, 23624492 - 23624409
Alignment:
| Q |
163 |
atcaattgaagaagataatctaatagtagattatcaacactaa--ttttttcacac--tctttcaccaccattctctctcttcc |
242 |
Q |
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||||||||||||| |||||||||||||| | |||||||| ||| ||||||||||| ||| |||||||||||||||||||||| |
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| T |
23624492 |
atcaattgaagaacataatctaatagtaaactatcaacaataaatttttttcacactatctctcaccaccattctctctcttcc |
23624409 |
T |
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Target: chr7; HSP #3
Raw Score: 40; E-Value: 0.00000000000009
Query Start/End: Original strand, 185 - 252
Target Start/End: Complemental strand, 24996636 - 24996566
Alignment:
| Q |
185 |
atagtagattatcaacacta-attttttcacactct--ttcaccaccattctctctcttccctccatcccc |
252 |
Q |
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|||||||| ||||||||||| ||||||||| ||||| ||||||||||||||||||| ||||||||||||| |
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| T |
24996636 |
atagtagactatcaacactagattttttcatactctctttcaccaccattctctctcctccctccatcccc |
24996566 |
T |
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Target: chr4 (Bit Score: 38; Significance: 0.000000000001; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 163 - 242
Target Start/End: Complemental strand, 34155609 - 34155526
Alignment:
| Q |
163 |
atcaattgaagaagataatctaatagtagattatcaacact--aattttttcacac--tctttcaccaccattctctctcttcc |
242 |
Q |
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||||||||||||| |||||||||| ||||| |||||||||| | ||||||||||| ||| |||||| ||||||||||||||| |
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| T |
34155609 |
atcaattgaagaacataatctaatggtagactatcaacactagatttttttcacactatctctcaccatcattctctctcttcc |
34155526 |
T |
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Target: chr2 (Bit Score: 35; Significance: 0.00000000009; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 81 - 123
Target Start/End: Complemental strand, 43619493 - 43619451
Alignment:
| Q |
81 |
tgatgacctgttgtagcaggtcatataaggaggttcattggtg |
123 |
Q |
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|||||| | |||||||||||||||||||||||||||||||||| |
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| T |
43619493 |
tgatgatcggttgtagcaggtcatataaggaggttcattggtg |
43619451 |
T |
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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 163 - 204
Target Start/End: Complemental strand, 15602803 - 15602762
Alignment:
| Q |
163 |
atcaattgaagaagataatctaatagtagattatcaacacta |
204 |
Q |
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|||| |||||||| |||||||||||||||| ||||||||||| |
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| T |
15602803 |
atcatttgaagaacataatctaatagtagactatcaacacta |
15602762 |
T |
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