View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6416_high_1 (Length: 540)
Name: NF6416_high_1
Description: NF6416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6416_high_1 |
 | |
|
Alignment Details
Target: chr5 (Bit Score: 332; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 332; E-Value: 0
Query Start/End: Original strand, 1 - 515
Target Start/End: Original strand, 495593 - 496113
Alignment:
| Q |
1 |
aaccagatactgcagggggattatctatttgaaatgccacacaaaaggcaaaaccaacccagtcaacatgcatattagagttctttatccttattattga |
100 |
Q |
| |
|
||||||||||||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |
|
|
| T |
495593 |
aaccagatactgccgggcgattatctatttgaaatgccacacaaaaggcaaaaccaacccagtcaacatgcatattagagttctttatcgttattattga |
495692 |
T |
|
| Q |
101 |
acctttctcaaacttgtgatcaaaccactgtggaatcaaaggatttccatgcaaatcaatatacttacgatgcaaaggaagaacaatgtcaaagccacat |
200 |
Q |
| |
|
||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |
|
|
| T |
495693 |
acctttctcaaacttgtaatcaaaccactgtggaatcaaagggtttccatgcaaatcaatatgcttacgatgcaaaggaagaacaatgtcaaagccacat |
495792 |
T |
|
| Q |
201 |
cggaagtgacgaggttcctggaaccacaagaaaaaagatgtaggtatatcagggccaaagagatatgtgcaagggaaggcattcaaagtgcacttcacaa |
300 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||||||||||||| | ||||||||| |
|
|
| T |
495793 |
cggaagtgacgaggttcctggaaccagaagaaaaaagatgtaggtatatcagagctaaagagatatgtgcaagggaaggcattaa------acttcacaa |
495886 |
T |
|
| Q |
301 |
cttgataaataatgaccagtagactaaggtgcagtcnnnnnnntaaatataatcataacatggttactggaacaa-------------taatttgaaata |
387 |
Q |
| |
|
|||||||||||||||||||| |||||| |||||||| ||||||||| ||||||||| |||| ||| || ||||||||||| |
|
|
| T |
495887 |
cttgataaataatgaccagtggactaatgtgcagtc--aaaaataaatataaccataacatgattaccagaagaacattcttaaatataaatttgaaata |
495984 |
T |
|
| Q |
388 |
tagac-gggtctagaattagttagagttttcataatatttatgtaaaaatctagaagtgctttaattatgaaaaactagaagtaagttttaattaggaag |
486 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||| |||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
|
|
| T |
495985 |
tagacaaagtctagaattagttagagttttcataatatctatgcaaaaatctagaagtgctttaattatgaaaaactagaagtaaattttaattaggaag |
496084 |
T |
|
| Q |
487 |
gtcctagaagtaagtctacagttttctaa |
515 |
Q |
| |
|
||| ||||||||||||||||||||||||| |
|
|
| T |
496085 |
gtcttagaagtaagtctacagttttctaa |
496113 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 41; Significance: 0.00000000000005; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000005
Query Start/End: Original strand, 172 - 220
Target Start/End: Complemental strand, 25641931 - 25641883
Alignment:
| Q |
172 |
gcaaaggaagaacaatgtcaaagccacatcggaagtgacgaggttcctg |
220 |
Q |
| |
|
||||||||| || |||||||||||||||||||||||||||||||||||| |
|
|
| T |
25641931 |
gcaaaggaataataatgtcaaagccacatcggaagtgacgaggttcctg |
25641883 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000008
Query Start/End: Original strand, 175 - 220
Target Start/End: Complemental strand, 25492120 - 25492075
Alignment:
| Q |
175 |
aaggaagaacaatgtcaaagccacatcggaagtgacgaggttcctg |
220 |
Q |
| |
|
|||||| |||||||||||||||||| || ||||||||||||||||| |
|
|
| T |
25492120 |
aaggaataacaatgtcaaagccacaccgaaagtgacgaggttcctg |
25492075 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University