View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6416_low_10 (Length: 236)
Name: NF6416_low_10
Description: NF6416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6416_low_10 |
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| [»] chr1 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 222; Significance: 1e-122; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 222; E-Value: 1e-122
Query Start/End: Original strand, 7 - 236
Target Start/End: Original strand, 2878810 - 2879039
Alignment:
| Q |
7 |
catcatcatcatcttctaataattcgcaataccaatttttaaaccatggtgttagatcagcatattggccagcaggtgatgatttttcaccttctttgat |
106 |
Q |
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| T |
2878810 |
catcatcatcttcttctaataattcgcaataccaatttttaaaccatggtgttagatcagcatattggccagcaggtgatgatttttcaccttctttgat |
2878909 |
T |
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| Q |
107 |
tgacacaaactacttcacacacattttattggccttcattcaaccagaaccaatttccttcaaacttgaaatcacaaaatccggcaaaaaatggggccag |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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| T |
2878910 |
tgacacaaactacttcacacacattttattggccttcattcaaccagaaccaatttccttcaaacttgaaatcacaaaatccggcataaaatggggccag |
2879009 |
T |
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| Q |
207 |
aatttcatcaaggcactccgccaccgttcc |
236 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
2879010 |
aatttcatcaaggcactccgccaccgttcc |
2879039 |
T |
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