View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6416_low_11 (Length: 234)
Name: NF6416_low_11
Description: NF6416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6416_low_11 |
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Alignment Details
Target: chr8 (Bit Score: 191; Significance: 1e-104; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 191; E-Value: 1e-104
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 25885792 - 25885994
Alignment:
| Q |
17 |
aattttctgacattttttctgctctaaattcaagaggaagagaaggaacatcgtctagtttaaggggagttttgtaacctttattaatcaaagggttcat |
116 |
Q |
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| T |
25885792 |
aattttctgacattttttctgctctaaattcaagaggaagtgaaggaacatcttctagtttaaggggagttttgtaacctttattaatcaaagggttcat |
25885891 |
T |
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| Q |
117 |
ccaaaaccaaactgttttggacaaaaatgaagaaccagcataaggactcaaatttccatcagttggaactgatgtatatgtcgctactacatcggatatt |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
25885892 |
ccaaaaccaaactgttttggacaaaaatgaagaaccagcataaggactcaaatttccatcagttggaaccgatgtatatgtcgctactacatcggatatt |
25885991 |
T |
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| Q |
217 |
ctt |
219 |
Q |
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||| |
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| T |
25885992 |
ctt |
25885994 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 183; E-Value: 4e-99
Query Start/End: Original strand, 17 - 219
Target Start/End: Original strand, 44349636 - 44349838
Alignment:
| Q |
17 |
aattttctgacattttttctgctctaaattcaagaggaagagaaggaacatcgtctagtttaaggggagttttgtaacctttattaatcaaagggttcat |
116 |
Q |
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|||||||||||||||||||||||||||||||||||||||| ||||||| ||| |||||||||||||||||||||||||| |||||||||||||||||||| |
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| T |
44349636 |
aattttctgacattttttctgctctaaattcaagaggaagtgaaggaatatcttctagtttaaggggagttttgtaaccgttattaatcaaagggttcat |
44349735 |
T |
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| Q |
117 |
ccaaaaccaaactgttttggacaaaaatgaagaaccagcataaggactcaaatttccatcagttggaactgatgtatatgtcgctactacatcggatatt |
216 |
Q |
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| T |
44349736 |
ccaaaaccaaactgttttggacaaaaatgaagaaccagcataaggactcaaatttccatcagtcggaactgatgtatatgtcgctactacatcggatatt |
44349835 |
T |
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| Q |
217 |
ctt |
219 |
Q |
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||| |
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| T |
44349836 |
ctt |
44349838 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 119; Significance: 6e-61; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 119; E-Value: 6e-61
Query Start/End: Original strand, 21 - 219
Target Start/End: Original strand, 14282965 - 14283163
Alignment:
| Q |
21 |
ttctgacattttttctgctctaaattcaagaggaagagaaggaacatcgtctagtttaaggggagttttgtaacctttattaatcaaagggttcatccaa |
120 |
Q |
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|||||||||||||||||||||||| || |||||||| |||| ||||| |||||||||||||| |||| |||||||||||||| |||||||||||||||| |
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| T |
14282965 |
ttctgacattttttctgctctaaaatcgagaggaagtaaaggtacatcttctagtttaaggggtgtttggtaacctttattaagcaaagggttcatccaa |
14283064 |
T |
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| Q |
121 |
aaccaaactgttttggacaaaaatgaagaaccagcataaggactcaaatttccatcagttggaactgatgtatatgtcgctactacatcggatattctt |
219 |
Q |
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| T |
14283065 |
taccaaactgttttggacaaaactgaagaacaggcataaggactcaaagttctatcggtggaaactgatggatatgttgctactacatcggatattctt |
14283163 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 25 - 219
Target Start/End: Original strand, 14321118 - 14321312
Alignment:
| Q |
25 |
gacattttttctgctctaaattcaagaggaagagaaggaacatcgtctagtttaaggggagttttgtaacctttattaatcaaagggttcatccaaaacc |
124 |
Q |
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|||||||||||||||||||| ||||||||||| ||||| ||||| |||||||||||||| ||||||||||||||||| | ||||||||||||||||||| |
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| T |
14321118 |
gacattttttctgctctaaaatcaagaggaagtgaaggtacatcttctagtttaaggggtgttttgtaacctttattgagtaaagggttcatccaaaacc |
14321217 |
T |
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| Q |
125 |
aaactgttttggacaaaaatgaagaaccagcataaggactcaaatttccatcagttggaactgatgtatatgtcgctactacatcggatattctt |
219 |
Q |
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| T |
14321218 |
accctgttttagacaaaaatgacgaacaagcataaggactcaaagttctatcggtcgaaattgaccgatatgttgctactacatcggatattctt |
14321312 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 95; E-Value: 1e-46
Query Start/End: Original strand, 25 - 219
Target Start/End: Original strand, 14304727 - 14304921
Alignment:
| Q |
25 |
gacattttttctgctctaaattcaagaggaagagaaggaacatcgtctagtttaaggggagttttgtaacctttattaatcaaagggttcatccaaaacc |
124 |
Q |
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|||||||||||||||||||| ||||||||||| ||||||||||| |||||||||||||| |||| ||| |||||||| | ||||| |||| |||||||| |
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| T |
14304727 |
gacattttttctgctctaaaatcaagaggaagtgaaggaacatcttctagtttaaggggtgtttggtagcctttattgagtaaaggattcagccaaaacc |
14304826 |
T |
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| Q |
125 |
aaactgttttggacaaaaatgaagaaccagcataaggactcaaatttccatcagttggaactgatgtatatgtcgctactacatcggatattctt |
219 |
Q |
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| T |
14304827 |
accctgttttggacaaaaatgaagaatgggcataaggactcaaagttctatcgattgaaatcgatggatatgtggctactacatcggatattctt |
14304921 |
T |
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