View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6416_low_2 (Length: 486)
Name: NF6416_low_2
Description: NF6416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6416_low_2 |
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Alignment Details
Target: chr7 (Bit Score: 150; Significance: 4e-79; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 150; E-Value: 4e-79
Query Start/End: Original strand, 208 - 470
Target Start/End: Original strand, 35107975 - 35108211
Alignment:
| Q |
208 |
gcatttcggtgtctgacaccggcacatgtcactaacacaaggggttcattcaattattttcattttcttaaattattattagtgtttacatgttagttac |
307 |
Q |
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| T |
35107975 |
gcatttcagtgtctgacaccggcacatgccactaacacaaggggttcattcaattattttcattttcttaaattattattagtgtt------------ac |
35108062 |
T |
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| Q |
308 |
aatgtcgtgtccggttcagaattaaaccaaaaggacaataggacagttaaaaagacaagttggttggcacctaaacttaacaatattgaaggagtcaact |
407 |
Q |
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| T |
35108063 |
a------tgtccggttcagaattaaaccaaaagga--------cagttaaaaagacaagttggttggcacctaaactcaacaatattgaaggagtcaact |
35108148 |
T |
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| Q |
408 |
gttgtacaaaccttgcttgaaaggtatctgttctagagtcatagcaaagttcagcatcataac |
470 |
Q |
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| T |
35108149 |
gttgcacataccttgcttgaaaggtatctgttctagagtcatagcaaagttcagcatcataac |
35108211 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 145; E-Value: 4e-76
Query Start/End: Original strand, 11 - 159
Target Start/End: Original strand, 35107782 - 35107930
Alignment:
| Q |
11 |
atgaagaacatgtgaagaagagtcaataggtggtactcttagcctttcccattttatgttttcctcagttgtccatctcccatgaggtgagtacctgtca |
110 |
Q |
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| T |
35107782 |
atgaagaacatgtgaagaagagtcaataggtggtactcttagcctttcccattttatgttttcctcagttgtccatctcccatgaggtgagtacctgtca |
35107881 |
T |
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| Q |
111 |
gagaaaacatgaacttcatgtttagagtttaatgaccttatctaccttt |
159 |
Q |
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| T |
35107882 |
gagaaaacatgaacttcatatttagagtttaatgaccttatctaccttt |
35107930 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 36; Significance: 0.00000000004; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 254 - 301
Target Start/End: Original strand, 30585121 - 30585168
Alignment:
| Q |
254 |
cattcaattattttcattttcttaaattattattagtgtttacatgtt |
301 |
Q |
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| T |
30585121 |
cattcaatcactttcattttcttaaattattattagtgtctacatgtt |
30585168 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 254 - 300
Target Start/End: Complemental strand, 16331020 - 16330974
Alignment:
| Q |
254 |
cattcaattattttcattttcttaaattattattagtgtttacatgt |
300 |
Q |
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| T |
16331020 |
catttaatcattttcattttcttaaattattactagtgtctacatgt |
16330974 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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