View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6416_low_3 (Length: 456)
Name: NF6416_low_3
Description: NF6416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6416_low_3 |
 | |
|
Alignment Details
Target: chr4 (Bit Score: 382; Significance: 0; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 18 - 423
Target Start/End: Original strand, 44869076 - 44869481
Alignment:
| Q |
18 |
aacataatcttcacagctgacaatcaatcctttgcacagagtatgatgttttttgttattattgtttttcaaatttcaatggcttcctctgtctttaatt |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44869076 |
aacataatcttcacagctgacaatcaatcctttgcacagagtatgatgttttttgttattattgtttttcaaatttcaatggcttcctctgtctttaatt |
44869175 |
T |
|
| Q |
118 |
tcaaattgatttcaaaaatattaatttgaattcaatctcaacttcaagctaaaatccattatggaggaaaaagtaatttagatgatacatgattttaaat |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
44869176 |
tcaaattgatttcaaaaatattaatttgaattcaatctcaacttcaagctaaaattcattatggaggaaaaagtaatttagatgatacatgattttaaat |
44869275 |
T |
|
| Q |
218 |
tgcggttgtggttaggttgagaaacttttaattgcagtaaaatataggaaaatgtggcgtgccgtcaaaattgtggccgtaatatgcctttcctgagatc |
317 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
|
|
| T |
44869276 |
tgcggttgtggttaggttgagaaacttttaattgcggtaaaatataggaaaatgtggcgtgccgtcaaaattgtggccgtgatatgcctttcctgagatc |
44869375 |
T |
|
| Q |
318 |
tcaaaaccctttatgtctgcaaactgcaatttaaaaccatgtatgaatgtataaaatcaatttcatttaaaaattattttagtcccagtggttttattgt |
417 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
44869376 |
tcaaaaccctttatgtctgcaaactgcaatttaaaaccatgtatgaacatataaaatcaatttcatttaaaaattattttagtcccaatggttttattgt |
44869475 |
T |
|
| Q |
418 |
ttttca |
423 |
Q |
| |
|
|||||| |
|
|
| T |
44869476 |
ttttca |
44869481 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University