View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6416_low_6 (Length: 305)
Name: NF6416_low_6
Description: NF6416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6416_low_6 |
 | |
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Alignment Details
Target: chr4 (Bit Score: 162; Significance: 2e-86; HSPs: 8)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 162; E-Value: 2e-86
Query Start/End: Original strand, 34 - 259
Target Start/End: Original strand, 7143086 - 7143311
Alignment:
| Q |
34 |
atttgaaggagaaaaaattttcatgtgaaattcccaactggatggataagttatcagagttacgtgttcttttattaggagggaacaatttggaaggaga |
133 |
Q |
| |
|
|||||| |||||| ||| ||||| || ||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
7143086 |
atttgagggagaacaaactttcaagtaaaattcccaactggatggataagctatcagagttacgtgttcttttattaggaaggaacaatttggaaggaga |
7143185 |
T |
|
| Q |
134 |
tattccaattcaattgagtcggttaaaaaggatcgacataatggacctatcgcaaaacatgctcaatgctttaataccaccttgcttctaaaatatgtca |
233 |
Q |
| |
|
|||||||||||||||| |||||||||||| |||||||| ||| |||||||| |||||||||||||||||| |||||||||||||||| ||||||||||| |
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|
| T |
7143186 |
tattccaattcaattgtgtcggttaaaaaagatcgacaaaatagacctatcagaaaacatgctcaatgcttcaataccaccttgcttccaaaatatgtca |
7143285 |
T |
|
| Q |
234 |
tttggaatgatataatatgttgataa |
259 |
Q |
| |
|
|||||||||||| ||||||||||||| |
|
|
| T |
7143286 |
tttggaatgatacaatatgttgataa |
7143311 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 140; E-Value: 2e-73
Query Start/End: Original strand, 34 - 257
Target Start/End: Complemental strand, 4856170 - 4855947
Alignment:
| Q |
34 |
atttgaaggagaaaaaattttcatgtgaaattcccaactggatggataagttatcagagttacgtgttcttttattaggagggaacaatttggaaggaga |
133 |
Q |
| |
|
|||||| |||||| ||||||||| || |||||||| ||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||| |
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|
| T |
4856170 |
atttgagggagaacaaattttcaggtaaaattccccactggatggataacctatcagagttacgtgttcttttactaggagggaacaacttggaaggaga |
4856071 |
T |
|
| Q |
134 |
tattccaattcaattgagtcggttaaaaaggatcgacataatggacctatcgcaaaacatgctcaatgctttaataccaccttgcttctaaaatatgtca |
233 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||||||||||||||||||||| | |||||||||||||||| ||||||| |||||||| |||||||||| |
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|
| T |
4856070 |
tattccaattcaattgtgtcggttaaaaaagatcgacataatggacctatcacggaacatgctcaatgcttcaataccatcttgcttccgaaatatgtca |
4855971 |
T |
|
| Q |
234 |
tttggaatgatataatatgttgat |
257 |
Q |
| |
|
|||||||||| | |||| |||||| |
|
|
| T |
4855970 |
tttggaatgagacaatacgttgat |
4855947 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 138; E-Value: 4e-72
Query Start/End: Original strand, 34 - 243
Target Start/End: Original strand, 5214744 - 5214953
Alignment:
| Q |
34 |
atttgaaggagaaaaaattttcatgtgaaattcccaactggatggataagttatcagagttacgtgttcttttattaggagggaacaatttggaaggaga |
133 |
Q |
| |
|
|||||| |||||| ||||||||| || |||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||| ||||||||||| |
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|
| T |
5214744 |
atttgagggagaacaaattttcaggtaaaattccccactggatggataagctatcagagttacgtgttcttttactaggagggaacaaattggaaggaga |
5214843 |
T |
|
| Q |
134 |
tattccaattcaattgagtcggttaaaaaggatcgacataatggacctatcgcaaaacatgctcaatgctttaataccaccttgcttctaaaatatgtca |
233 |
Q |
| |
|
|||||||||||||||| |||||||||||| ||| ||||||||||||||||| | |||||||||||||||| ||||||| |||||||| |||||||||| |
|
|
| T |
5214844 |
tattccaattcaattgtgtcggttaaaaaagatagacataatggacctatcacggaacatgctcaatgcttcaataccatcttgcttccgaaatatgtca |
5214943 |
T |
|
| Q |
234 |
tttggaatga |
243 |
Q |
| |
|
|||||||||| |
|
|
| T |
5214944 |
tttggaatga |
5214953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 116; E-Value: 5e-59
Query Start/End: Original strand, 34 - 261
Target Start/End: Original strand, 5173846 - 5174073
Alignment:
| Q |
34 |
atttgaaggagaaaaaattttcatgtgaaattcccaactggatggataagttatcagagttacgtgttcttttattaggagggaacaatttggaaggaga |
133 |
Q |
| |
|
|||||| |||||| ||| ||||| || ||||||||||||||||||||||| | |||||||| | |||||||||||||||||||||||||| |||||||| |
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|
| T |
5173846 |
atttgagggagaacaaactttcaggtaaaattcccaactggatggataagctctcagagttgagggttcttttattaggagggaacaattttgaaggaga |
5173945 |
T |
|
| Q |
134 |
tattccaattcaattgagtcggttaaaaaggatcgacataatggacctatcgcaaaacatgctcaatgctttaataccaccttgcttctaaaatatgtca |
233 |
Q |
| |
|
|||||||||||||| || |||| |||| ||||||||||||||| ||||| | |||||||||||||||| ||||||| ||||| || ||||||||||| |
|
|
| T |
5173946 |
aattccaattcaattttgttggttcaaaaagatcgacataatggatctatcacggaacatgctcaatgcttcaataccatcttgcctccaaaatatgtca |
5174045 |
T |
|
| Q |
234 |
tttggaatgatataatatgttgataatg |
261 |
Q |
| |
|
|||||||||| | |||||||| |||||| |
|
|
| T |
5174046 |
tttggaatgagacaatatgttcataatg |
5174073 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #5
Raw Score: 108; E-Value: 3e-54
Query Start/End: Original strand, 34 - 257
Target Start/End: Original strand, 5196587 - 5196810
Alignment:
| Q |
34 |
atttgaaggagaaaaaattttcatgtgaaattcccaactggatggataagttatcagagttacgtgttcttttattaggagggaacaatttggaaggaga |
133 |
Q |
| |
|
|||||| |||||| ||||||||| | ||||||||||||||||||||||||| ||||| ||| | || ||||||||||||||||||||||| |||||||| |
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|
| T |
5196587 |
atttgagggagaacaaattttcaggaaaaattcccaactggatggataagttctcagaattaagggtccttttattaggagggaacaattttgaaggaga |
5196686 |
T |
|
| Q |
134 |
tattccaattcaattgagtcggttaaaaaggatcgacataatggacctatcgcaaaacatgctcaatgctttaataccaccttgcttctaaaatatgtca |
233 |
Q |
| |
|
|||||||| || ||| |||||||||||| |||| ||||||||||| |||| | ||||||||||||||||| |||||| ||||||| |||||||| | |
|
|
| T |
5196687 |
aattccaatgcagttgtgtcggttaaaaaagatcaacataatggacttatcacgaaacatgctcaatgcttccataccatcttgctttcgaaatatgtta |
5196786 |
T |
|
| Q |
234 |
tttggaatgatataatatgttgat |
257 |
Q |
| |
|
|||||||||| | ||||||||||| |
|
|
| T |
5196787 |
tttggaatgagacaatatgttgat |
5196810 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #6
Raw Score: 103; E-Value: 3e-51
Query Start/End: Original strand, 48 - 257
Target Start/End: Original strand, 5183195 - 5183405
Alignment:
| Q |
48 |
aaattttcatgtgaaattcccaactggatggataagttatcagagttacgtgttcttttattaggagggaacaatttggaaggagatattccaattcaat |
147 |
Q |
| |
|
||||||||| || |||||||||| |||||||||||| | ||||||||| | || ||| ||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
5183195 |
aaattttcaggtaaaattcccaattggatggataagctctcagagttaagggtccttctattaggagggaacaattttgaaggagatattccaattcaat |
5183294 |
T |
|
| Q |
148 |
tgagtcggt-taaaaaggatcgacataatggacctatcgcaaaacatgctcaatgctttaataccaccttgcttctaaaatatgtcatttggaatgatat |
246 |
Q |
| |
|
|| ||| | |||||| |||| ||||||||||| |||| | |||||||||||||||| ||||||| ||||||| ||||||||||||||||||||| | |
|
|
| T |
5183295 |
tgtgtccttctaaaaaagatcaacataatggacttatcacggaacatgctcaatgcttcaataccatcttgctttcaaaatatgtcatttggaatgagac |
5183394 |
T |
|
| Q |
247 |
aatatgttgat |
257 |
Q |
| |
|
||||||||||| |
|
|
| T |
5183395 |
aatatgttgat |
5183405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #7
Raw Score: 100; E-Value: 2e-49
Query Start/End: Original strand, 34 - 261
Target Start/End: Complemental strand, 4841673 - 4841446
Alignment:
| Q |
34 |
atttgaaggagaaaaaattttcatgtgaaattcccaactggatggataagttatcagagttacgtgttcttttattaggagggaacaatttggaaggaga |
133 |
Q |
| |
|
|||||| |||||| ||| ||||| || |||||||||| |||||||||||| | ||||||||| | |||||| ||||||||||||||||||| |||||||| |
|
|
| T |
4841673 |
atttgagggagaacaaactttcaggtaaaattcccaattggatggataagctctcagagttaagggttcttctattaggagggaacaattttgaaggaga |
4841574 |
T |
|
| Q |
134 |
tattccaattcaattgagtcggttaaaaaggatcgacataatggacctatcgcaaaacatgctcaatgctttaataccaccttgcttctaaaatatgtca |
233 |
Q |
| |
|
||||||||||||||| ||| |||||| ||| |||||||||| |||| | |||||||||||||||| ||||||| |||||||| ||||||||||| |
|
|
| T |
4841573 |
aattccaattcaattgtgtcatctaaaaaatatcaccataatggacttatcacggaacatgctcaatgcttcaataccatcttgcttccaaaatatgtca |
4841474 |
T |
|
| Q |
234 |
tttggaatgatataatatgttgataatg |
261 |
Q |
| |
|
|||||||||| | || ||||| |||||| |
|
|
| T |
4841473 |
tttggaatgagacaacatgttcataatg |
4841446 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #8
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 34 - 238
Target Start/End: Original strand, 5160940 - 5161144
Alignment:
| Q |
34 |
atttgaaggagaaaaaattttcatgtgaaattcccaactggatggataagttatcagagttacgtgttcttttattaggagggaacaatttggaaggaga |
133 |
Q |
| |
|
|||||| |||||| ||||||||| || |||||||||| ||||| ||||| | |||||||| |||||||||||| ||||| |||| || ||||||||||| |
|
|
| T |
5160940 |
atttgagggagaacaaattttcaggtaaaattcccaattggattgataatctctcagagttgcgtgttcttttactaggatggaataacttggaaggaga |
5161039 |
T |
|
| Q |
134 |
tattccaattcaattgagtcggttaaaaaggatcgacataatggacctatcgcaaaacatgctcaatgctttaataccaccttgcttctaaaatatgtca |
233 |
Q |
| |
|
|||||||||||||||| |||| ||||||| |||| |||| ||||||||||||| |||||| ||||||||| ||||||| |||||||| ||||| || || |
|
|
| T |
5161040 |
tattccaattcaattgtgtcgattaaaaaagatcaacatgatggacctatcgcggaacatgttcaatgcttcaataccatcttgcttccaaaatttgaca |
5161139 |
T |
|
| Q |
234 |
tttgg |
238 |
Q |
| |
|
||||| |
|
|
| T |
5161140 |
tttgg |
5161144 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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