View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6416_low_9 (Length: 252)
Name: NF6416_low_9
Description: NF6416
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6416_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 173; Significance: 4e-93; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 173; E-Value: 4e-93
Query Start/End: Original strand, 1 - 233
Target Start/End: Original strand, 38945039 - 38945277
Alignment:
| Q |
1 |
tcaaaggagttctccatcacagaaaatggaactggatctcagaaacaaaaattccacacacagatatgagagatgtgaagaacgaaagtggaactacaaa |
100 |
Q |
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| T |
38945039 |
tcaaaggagttctccatcacagaaaatggaactggatctcagaaacaaaaattatacacacagatatgagagatgtgaagaacgaaagtggaactgcaaa |
38945138 |
T |
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| Q |
101 |
ctgatcacaacaacta---aacaatcacgtatatatattgaaagggcatggggcagtatagagatttcaccgcaagacagagttc----aacaactacgg |
193 |
Q |
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| T |
38945139 |
ctgatcacagaaactacggaacaa-aacgtatatatattgaaagggcatggggtagtatagagatttcaccgcaagacagagttcaacaaacaactacgg |
38945237 |
T |
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| Q |
194 |
aacaaaacgacgaaaaacccgacacacacagatcaagtac |
233 |
Q |
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|||||||||||||||||||||||||||||||||||||||| |
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| T |
38945238 |
aacaaaacgacgaaaaacccgacacacacagatcaagtac |
38945277 |
T |
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