View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6417_high_10 (Length: 228)
Name: NF6417_high_10
Description: NF6417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6417_high_10 |
 | |
|
| [»] chr8 (1 HSPs) |
| |
|
Alignment Details
Target: chr8 (Bit Score: 220; Significance: 1e-121; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 220; E-Value: 1e-121
Query Start/End: Original strand, 5 - 228
Target Start/End: Original strand, 36458238 - 36458461
Alignment:
| Q |
5 |
cagtattttccagcgtagttatgcctcttatcgatttgaaatcttaacacacttcctcataccacggacttaacatttggagattggacaagtagtctga |
104 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36458238 |
cagtattttccagcgtagttatgcctcttatcgatttgaaatcttaacacactgcctcataccacggacttaacatttggagattggacaagtagtctga |
36458337 |
T |
|
| Q |
105 |
tatcaacactccaccacgcttagggatgaacatctagaacatgaacaatacaaatgacccgataacaaatattagattaagacatcgtctgataatttga |
204 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
36458338 |
tatcaacactccaccacgcttagggatgaacatctagaacatgaacaatacaaatgacccgataacaaatattagattaagacatcgtctgataatttga |
36458437 |
T |
|
| Q |
205 |
gctttaattttaactcaaccttaa |
228 |
Q |
| |
|
|||||||||||||||||||||||| |
|
|
| T |
36458438 |
gctttaattttaactcaaccttaa |
36458461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University