View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6417_low_1 (Length: 698)

Name: NF6417_low_1
Description: NF6417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6417_low_1
NF6417_low_1
[»] chr2 (5 HSPs)
chr2 (1-319)||(14755887-14756205)
chr2 (585-671)||(14756259-14756346)
chr2 (325-424)||(39575445-39575544)
chr2 (367-430)||(37038520-37038582)
chr2 (325-378)||(39792078-39792131)
[»] chr3 (7 HSPs)
chr3 (352-430)||(31844969-31845047)
chr3 (320-357)||(53653321-53653358)
chr3 (325-387)||(54694453-54694515)
chr3 (359-412)||(42214483-42214536)
chr3 (318-378)||(29577235-29577295)
chr3 (322-378)||(33840132-33840188)
chr3 (328-388)||(37822878-37822938)
[»] chr5 (2 HSPs)
chr5 (454-497)||(40001228-40001271)
chr5 (326-380)||(41384820-41384873)
[»] chr7 (4 HSPs)
chr7 (350-424)||(26807413-26807487)
chr7 (325-422)||(28197983-28198080)
chr7 (350-422)||(35116902-35116974)
chr7 (320-364)||(37492725-37492769)
[»] chr6 (1 HSPs)
chr6 (320-387)||(17590311-17590378)
[»] chr1 (2 HSPs)
chr1 (371-430)||(45456605-45456664)
chr1 (326-387)||(15647274-15647335)


Alignment Details
Target: chr2 (Bit Score: 267; Significance: 1e-149; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 267; E-Value: 1e-149
Query Start/End: Original strand, 1 - 319
Target Start/End: Original strand, 14755887 - 14756205
Alignment:
Q  1 atacatataaataaaaagtttttataacattgtaggcaccattccagcacacacaccatgcataattccaaatgcacaaccaaataagcctctaaattcc 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14755887 atacatataaataaaaagtttttataacattgtaggcaccattccagcacacacaccatgcataattccaaatgcacaaccaaataagcctctaaattcc 14755986  T
Q  101 aaccaaattacatgcatgacctttcatgacagccaatcagcctgctgtgttggtgaaattacttcactgccctctcttgtcacccccatgcaactactat 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  14755987 aaccaaattacatgcatgacctttcatgacagccaatcagcctgctgtgttggtgaaattacttcactgccctctcttgtcacccccatgcaactactat 14756086  T
Q  201 gacaggtcaaagataagacttgggttccaagatatgcaatcttagttgtttgattgaatcttaacgtcatagattttacctaaatatctagaggttgaga 300  Q
    |||| |||||||||||||||||||||||||||||||||||||||||||||| ||| || ||||| |||||| |||| |||||||| |||| |||| ||||    
T  14756087 gacatgtcaaagataagacttgggttccaagatatgcaatcttagttgtttaattaaaccttaaagtcatatatttgacctaaatttctaaaggtcgaga 14756186  T
Q  301 ttattatgtattcgcgcaa 319  Q
    ||||| ||| || ||||||    
T  14756187 ttattctgtgtttgcgcaa 14756205  T

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Target: chr2; HSP #2
Raw Score: 52; E-Value: 2e-20
Query Start/End: Original strand, 585 - 671
Target Start/End: Original strand, 14756259 - 14756346
Alignment:
Q  585 caaatcaaacgactaagactaacaacaatttaaatgcatgaccgtaacaaatatattttatcaaaaacact-aaggataagatggttg 671  Q
    |||||||||||||||||||||||||  ||||||||||||||||||| |||||||||||  ||||| ||||| ||||| ||||||||||    
T  14756259 caaatcaaacgactaagactaacaatgatttaaatgcatgaccgtagcaaatatatttcctcaaagacactaaaggacaagatggttg 14756346  T

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Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 325 - 424
Target Start/End: Original strand, 39575445 - 39575544
Alignment:
Q  325 atgctaacaagtgtctttaggacatttgttaaggattttaaaaaggaaataatttacaaatttagtgcatgaaaaatttctttttaaagtttcaatgtgt 424  Q
    ||||||||||||  | ||||| || || |||||||||  ||| ||||||||||||| ||||||  || || |||| ||||||||| ||||||||||||||    
T  39575445 atgctaacaagttcccttagggcacttattaaggattcaaaagaggaaataatttataaattttatgtataaaaagtttctttttgaagtttcaatgtgt 39575544  T

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Target: chr2; HSP #4
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 367 - 430
Target Start/End: Complemental strand, 37038582 - 37038520
Alignment:
Q  367 aaggaaataatttacaaatttagtgcatgaaaaatttctttttaaagtttcaatgtgtcgaata 430  Q
    ||||||||||||||||||||||  | ||||||| ||| ||||| |||||||||||||| |||||    
T  37038582 aaggaaataatttacaaatttaaagtatgaaaagttt-ttttttaagtttcaatgtgttgaata 37038520  T

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Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 378
Target Start/End: Complemental strand, 39792131 - 39792078
Alignment:
Q  325 atgctaacaagtgtctttaggacatttgttaaggattttaaaaaggaaataatt 378  Q
    |||||||||| ||||||||||||| |||||||| |||  ||||| |||||||||    
T  39792131 atgctaacaaatgtctttaggacacttgttaagaattcaaaaaaagaaataatt 39792078  T

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Target: chr3 (Bit Score: 47; Significance: 2e-17; HSPs: 7)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 352 - 430
Target Start/End: Complemental strand, 31845047 - 31844969
Alignment:
Q  352 gttaaggattttaaaaaggaaataatttacaaatttagtgcatgaaaaatttctttttaaagtttcaatgtgtcgaata 430  Q
    ||||||||||  ||||||||||||||||||||||||| || |||||||||| |||||||||||| |||| ||| |||||    
T  31845047 gttaaggattcaaaaaaggaaataatttacaaatttaatgtatgaaaaattactttttaaagttccaatatgttgaata 31844969  T

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Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.000000001
Query Start/End: Original strand, 320 - 357
Target Start/End: Original strand, 53653321 - 53653358
Alignment:
Q  320 gggtcatgctaacaagtgtctttaggacatttgttaag 357  Q
    |||||||||||||||||||||||| |||||||||||||    
T  53653321 gggtcatgctaacaagtgtctttaagacatttgttaag 53653358  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 325 - 387
Target Start/End: Original strand, 54694453 - 54694515
Alignment:
Q  325 atgctaacaagtgtctttaggacatttgttaaggattttaaaaaggaaataatttacaaattt 387  Q
    ||||||||||||| |||||||||| |||||||  |||||||||  ||||||||| | ||||||    
T  54694453 atgctaacaagtgactttaggacacttgttaacaattttaaaacagaaataattaataaattt 54694515  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 359 - 412
Target Start/End: Original strand, 42214483 - 42214536
Alignment:
Q  359 attttaaaaaggaaataatttacaaatttagtgcatgaaaaatttctttttaaa 412  Q
    |||| |||||| |||||||||||||||||| || ||||||| || |||||||||    
T  42214483 atttaaaaaagaaaataatttacaaatttaatgtatgaaaagttgctttttaaa 42214536  T

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Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 318 - 378
Target Start/End: Original strand, 29577235 - 29577295
Alignment:
Q  318 aagggtcatgctaacaagtgtctttaggacatttgttaaggattttaaaaaggaaataatt 378  Q
    |||||| ||||||||| ||| | ||||| |||| ||||||||||| |||||||||| ||||    
T  29577235 aagggttatgctaacaggtgcccttagggcattagttaaggatttaaaaaaggaaacaatt 29577295  T

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Target: chr3; HSP #6
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 322 - 378
Target Start/End: Original strand, 33840132 - 33840188
Alignment:
Q  322 gtcatgctaacaagtgtctttaggacatttgttaaggattttaaaaaggaaataatt 378  Q
    ||||||||||||||||| |  |||||| || |||||||||||||||  |||||||||    
T  33840132 gtcatgctaacaagtgtttaaaggacacttattaaggattttaaaatagaaataatt 33840188  T

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Target: chr3; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 328 - 388
Target Start/End: Original strand, 37822878 - 37822938
Alignment:
Q  328 ctaacaagtgtctttaggacatttgttaaggattttaaaaaggaaataatttacaaattta 388  Q
    ||||||||||||||||| |||||||||||  |||  ||||  ||||||||||| |||||||    
T  37822878 ctaacaagtgtctttagaacatttgttaaaaattcaaaaatagaaataatttataaattta 37822938  T

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Target: chr5 (Bit Score: 36; Significance: 0.00000000007; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 454 - 497
Target Start/End: Complemental strand, 40001271 - 40001228
Alignment:
Q  454 acttcttaacaagtatcttaaggacacttattagcatttccctt 497  Q
    |||||||||||||| |||||||||||||||||| ||||||||||    
T  40001271 acttcttaacaagtgtcttaaggacacttattaacatttccctt 40001228  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000006
Query Start/End: Original strand, 326 - 380
Target Start/End: Complemental strand, 41384873 - 41384820
Alignment:
Q  326 tgctaacaagtgtctttaggacatttgttaaggattttaaaaaggaaataattta 380  Q
    |||||||||||||||| |||||||||||||||||||  ||||  |||||||||||    
T  41384873 tgctaacaagtgtctt-aggacatttgttaaggattcaaaaatagaaataattta 41384820  T

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Target: chr7 (Bit Score: 35; Significance: 0.0000000003; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 35; E-Value: 0.0000000003
Query Start/End: Original strand, 350 - 424
Target Start/End: Complemental strand, 26807487 - 26807413
Alignment:
Q  350 ttgttaaggattttaaaaaggaaataatttacaaatttagtgcatgaaaaatttctttttaaagtttcaatgtgt 424  Q
    |||||||| |||| |||| |||||| ||||||||||||| |  ||||||| || ||||||||| |||||||||||    
T  26807487 ttgttaagtatttaaaaatggaaatgatttacaaatttaatttatgaaaagttactttttaaaatttcaatgtgt 26807413  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 325 - 422
Target Start/End: Original strand, 28197983 - 28198080
Alignment:
Q  325 atgctaacaagtgtctttaggacatttgttaaggattttaaaaaggaaataatttacaaatttagtgcatgaaaaatttctttttaaagtttcaatgt 422  Q
    ||||||||||||| | ||||  || ||||||||||||  ||| ||||||||||||| ||| ||  || |  |||| ||||||||| ||||||||||||    
T  28197983 atgctaacaagtgcccttagtgcacttgttaaggattcaaaagaggaaataatttataaaatttatgtagaaaaagtttctttttgaagtttcaatgt 28198080  T

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Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 350 - 422
Target Start/End: Complemental strand, 35116974 - 35116902
Alignment:
Q  350 ttgttaaggattttaaaaaggaaataatttacaaatttagtgcatgaaaaattt-ctttttaaagtttcaatgt 422  Q
    ||||||||||||  ||||||||||||||||| ||||||  || | ||||||||| |||||| ||||||||||||    
T  35116974 ttgttaaggattcaaaaaaggaaataatttataaattttatgta-gaaaaatttcctttttgaagtttcaatgt 35116902  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 320 - 364
Target Start/End: Complemental strand, 37492769 - 37492725
Alignment:
Q  320 gggtcatgctaacaagtgtctttaggacatttgttaaggatttta 364  Q
    |||||||||||||  ||||||||||||||  ||||||||||||||    
T  37492769 gggtcatgctaacttgtgtctttaggacacatgttaaggatttta 37492725  T

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Target: chr6 (Bit Score: 32; Significance: 0.00000002; HSPs: 1)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 320 - 387
Target Start/End: Complemental strand, 17590378 - 17590311
Alignment:
Q  320 gggtcatgctaacaagtgtctttaggacatttgttaaggattttaaaaaggaaataatttacaaattt 387  Q
    |||| ||||| ||||||||  ||||||||||||||||| ||| | |||||||||| ||||| ||||||    
T  17590378 gggttatgctgacaagtgttgttaggacatttgttaagcattctgaaaaggaaatgatttataaattt 17590311  T

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Target: chr1 (Bit Score: 32; Significance: 0.00000002; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.00000002
Query Start/End: Original strand, 371 - 430
Target Start/End: Original strand, 45456605 - 45456664
Alignment:
Q  371 aaataatttacaaatttagtgcatgaaaaatttctttttaaagtttcaatgtgtcgaata 430  Q
    |||||||||||||||||| |  ||||||| || |||| |||||||||||||||| |||||    
T  45456605 aaataatttacaaatttaatttatgaaaagttgctttgtaaagtttcaatgtgttgaata 45456664  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 326 - 387
Target Start/End: Complemental strand, 15647335 - 15647274
Alignment:
Q  326 tgctaacaagtgtctttaggacatttgttaaggattttaaaaaggaaataatttacaaattt 387  Q
    |||||||||||||| |||||||||| |||| ||||   |||| |||||||||||| ||||||    
T  15647335 tgctaacaagtgtccttaggacattagttagggatgcaaaaatggaaataatttataaattt 15647274  T

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