View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6417_low_2 (Length: 490)
Name: NF6417_low_2
Description: NF6417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6417_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 436; Significance: 0; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 436; E-Value: 0
Query Start/End: Original strand, 1 - 480
Target Start/End: Complemental strand, 41015078 - 41014599
Alignment:
| Q |
1 |
ctgtggtgttacaaaatttgaaccaactgctattgatccgcgatatgctatttagttcaatgtgttgtcatataggctcgatatagcattgtagtgtagc |
100 |
Q |
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| T |
41015078 |
ctgtggtgttacaaaatttgaacaaactgctattgttccgtgatatgctatttagtacaaagtgttgtcatatagctgcgatatagcactgtagtgtagc |
41014979 |
T |
|
| Q |
101 |
ataatttgaacaattgcaattgacaacgctgaatttttgaaggccacatgaatttttgaaaaaaccatagggaatgactttttaaactttcatagatgtc |
200 |
Q |
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| T |
41014978 |
ataatttgaacaattgcaattgacaacgctgaatttttgaaggccacatgaattttcgaaaaaaccatagggaatgactttttaaactttcatagatgtc |
41014879 |
T |
|
| Q |
201 |
aaaaatacaaaggatctgttttctgttaaattcttacttttttcctaaaattttataccatacatactaaacttttagttttggaattttagattatcta |
300 |
Q |
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| T |
41014878 |
aaaaatacaaaggatctgttttctgttaaattcttacttttttcctaaaattttataccatacatactaaacttttagttttggaattttagattatcta |
41014779 |
T |
|
| Q |
301 |
atatgatattcaacaaacacctttttaatattgcaatatgatgcacctttcatcgcatatggggccctaactgttctgcatatttttggcagggttatat |
400 |
Q |
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| T |
41014778 |
atatgatattcaacaaacacctttttaatattgcaatatgatgcacctttcatcgcatatggggccctaactgttctgcatgtttttggcagggttatat |
41014679 |
T |
|
| Q |
401 |
actttactctgtaaaaaacaaacttaaaccagaatatattggtctttctggtgacgaaattaagaaattgaagttctctg |
480 |
Q |
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| T |
41014678 |
actttactctgtaaaaaacaaacttaaaccagaatatattggtctttctggtgacgaaattaagaaattgaagttctctg |
41014599 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 213; Significance: 1e-116; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 159 - 480
Target Start/End: Complemental strand, 12113705 - 12113372
Alignment:
| Q |
159 |
aaaaaaccatagggaatgactttttaaactttcatagatgtcaaaaatacaaaggatctgttttctgttaaattcttacttttttcctaaaattttatac |
258 |
Q |
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||||||||| | ||||||||||||||| ||||||||||||| ||||||| ||||||||||| |||||||||| |||||||||| | || ||||||||||| |
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| T |
12113705 |
aaaaaaccagaaggaatgactttttaagctttcatagatgtaaaaaatataaaggatctgtcttctgttaaactcttacttttatgcttaaattttatac |
12113606 |
T |
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| Q |
259 |
ca-------taca---tactaaacttttagttttggaattttagattatctaatatgatattcaacaaacacctttttaatat---tgcaatatgatgca |
345 |
Q |
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| T |
12113605 |
ctgtctgtctacacattactaaacttttagttttggaattttagattatctaatatgatattcaacaaacatctttttaatatatgtgcattatgatgca |
12113506 |
T |
|
| Q |
346 |
cctttcatcgcatatggggccctaactgttctgcatatttttggcagggttatatactttactctgtaaaaaacaaacttaaaccagaatatattggtct |
445 |
Q |
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| T |
12113505 |
cctttcatcgcatatggggcc-taactgttctgcatgtttttggcagggttatatactttactctgtaaaaaacaaacttaaaccagaatatattggtct |
12113407 |
T |
|
| Q |
446 |
ttctggtgacgaaattaagaaattgaagttctctg |
480 |
Q |
| |
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|||| |||||||||||||||||||||||||||||| |
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| T |
12113406 |
ttctagtgacgaaattaagaaattgaagttctctg |
12113372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 14 - 75
Target Start/End: Complemental strand, 1110470 - 1110409
Alignment:
| Q |
14 |
aaatttgaaccaactgctattgatccgcgatatgctatttagttcaatgtgttgtcatatag |
75 |
Q |
| |
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|||||||||| || |||||||| | || ||||||||||||||||| | ||||||||| |||| |
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| T |
1110470 |
aaatttgaacaaattgctattgtttcgggatatgctatttagttctaagtgttgtcaaatag |
1110409 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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