View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6417_low_3 (Length: 456)

Name: NF6417_low_3
Description: NF6417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6417_low_3
NF6417_low_3
[»] chr4 (3 HSPs)
chr4 (8-440)||(47331405-47331837)
chr4 (198-272)||(41922020-41922094)
chr4 (61-124)||(36984031-36984094)
[»] chr3 (4 HSPs)
chr3 (187-270)||(621996-622079)
chr3 (188-271)||(16118500-16118583)
chr3 (177-291)||(48847650-48847765)
chr3 (201-289)||(45675751-45675839)
[»] chr6 (3 HSPs)
chr6 (187-288)||(32312798-32312899)
chr6 (172-269)||(5642567-5642663)
chr6 (232-272)||(6368800-6368840)
[»] chr5 (4 HSPs)
chr5 (171-290)||(15150772-15150891)
chr5 (179-252)||(38153350-38153423)
chr5 (198-271)||(37060345-37060418)
chr5 (179-275)||(15156555-15156650)
[»] chr7 (3 HSPs)
chr7 (178-246)||(10201384-10201452)
chr7 (178-239)||(27933540-27933601)
chr7 (240-291)||(36424272-36424323)
[»] chr1 (2 HSPs)
chr1 (179-289)||(43292712-43292822)
chr1 (188-257)||(30192240-30192309)
[»] scaffold0095 (1 HSPs)
scaffold0095 (198-291)||(37830-37923)
[»] scaffold0065 (1 HSPs)
scaffold0065 (188-285)||(49533-49630)
[»] chr8 (2 HSPs)
chr8 (198-291)||(39396878-39396971)
chr8 (198-269)||(41146144-41146215)


Alignment Details
Target: chr4 (Bit Score: 365; Significance: 0; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 8 - 440
Target Start/End: Original strand, 47331405 - 47331837
Alignment:
Q  8 acatcatcacaaaataaaatttcatcgattgtttggatctctaagtatcaattaggagttgaaatgaaacacatgaactctggttgacgtgccacttatc 107  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  47331405 acatcatcacaaaataaaatttcatcgattgtttggatctctaagtatcaattaggagttgaaatgaaacacatgaactctggttgacgtgccacttatc 47331504  T
Q  108 cctctgattcatgatattgaaataatactcttgttagtttgtgtttggttccaagtttgcacatcaatacatttttactgtgatttctaaaagcttcaaa 207  Q
    |||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  47331505 cctctgattcatgaaattgaaataatactcttattagtttgtgtttggttccaagtttgcacatcgatacatttttactgtgatttctaaaagcttcaaa 47331604  T
Q  208 tactagcttctacgataatgtgattttttgccgtgattttcatcagactctgttttacaaacgcagtactaaatagacacttaaagatggtgttggttag 307  Q
    |||||||||||| |||||||||||||||||||||||||||||||| | | |||||||||||| ||||| |||| ||||||||||||||||||||||||||    
T  47331605 tactagcttctatgataatgtgattttttgccgtgattttcatcaaattgtgttttacaaacacagtattaaacagacacttaaagatggtgttggttag 47331704  T
Q  308 gatatacaaatgaaactcttaataaaggtgaatgttggtccatagcttgtggagaaggtgttcgtcctttgatggtgaattaattttaaattcatatttg 407  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||    
T  47331705 gatatacaaatgaaactcttaataaaggtgaatgttggtccatagcttgtggagaaggtgttcgtcctttgatggtggattaattttaaattcatatttg 47331804  T
Q  408 atccctnnnnnnnntagacaaaatgttatgtac 440  Q
    ||||||        |||||||||||||||||||    
T  47331805 atccctaaaaaaaatagacaaaatgttatgtac 47331837  T

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Target: chr4; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 198 - 272
Target Start/End: Original strand, 41922020 - 41922094
Alignment:
Q  198 aagcttcaaatactagcttctacgataatgtgattttttgccgtgattttcatcagactctgttttacaaacgca 272  Q
    ||||| |||||||||||||||| | ||| ||| ||||||||||||||||  |||| |||| ||||| ||||||||    
T  41922020 aagctccaaatactagcttctaggttaacgtggttttttgccgtgatttctatcaaactccgtttttcaaacgca 41922094  T

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Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 61 - 124
Target Start/End: Original strand, 36984031 - 36984094
Alignment:
Q  61 aggagttgaaatgaaacacatgaactctggttgacgtgccacttatccctctgattcatgatat 124  Q
    |||||||| ||||||| || ||||||||||||||||||||  | |||| |||||| ||||||||    
T  36984031 aggagttggaatgaaatacgtgaactctggttgacgtgcccatgatccatctgatccatgatat 36984094  T

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Target: chr3 (Bit Score: 48; Significance: 3e-18; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 187 - 270
Target Start/End: Complemental strand, 622079 - 621996
Alignment:
Q  187 gtgatttctaaaagcttcaaatactagcttctacgataatgtgattttttgccgtgattttcatcagactctgttttacaaacg 270  Q
    ||||||| |||||||| |||||||||||||||||| ||| ||| |||||||| ||||||||||||| ||||| |||| ||||||    
T  622079 gtgatttttaaaagctccaaatactagcttctacgttaacgtggttttttgctgtgattttcatcaaactctattttgcaaacg 621996  T

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Target: chr3; HSP #2
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 188 - 271
Target Start/End: Complemental strand, 16118583 - 16118500
Alignment:
Q  188 tgatttctaaaagcttcaaatactagcttctacgataatgtgattttttgccgtgattttcatcagactctgttttacaaacgc 271  Q
    ||||||| ||||||| |||||||||||||||||| ||| ||| ||||||| |||||||| ||||| | ||| |||| |||||||    
T  16118583 tgatttccaaaagctccaaatactagcttctacgctaacgtggttttttgtcgtgatttccatcaaattctattttgcaaacgc 16118500  T

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Target: chr3; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 177 - 291
Target Start/End: Original strand, 48847650 - 48847765
Alignment:
Q  177 catttttactgtgatttctaaaagcttcaaatactagcttctacgataatgtgattttttgccgtgattttca-tcagactctgttttacaaacgcagta 275  Q
    ||||||| | |||||||  | ||||||||||||||| ||||  || ||| ||| |||||||||||||||| || ||| |||||||||| ||||||| |||    
T  48847650 catttttgccgtgattttcacaagcttcaaatactaacttcctcgctaacgtggttttttgccgtgatttccattcaaactctgtttttcaaacgctgta 48847749  T
Q  276 ctaaatagacacttaa 291  Q
    | ||| ||||||||||    
T  48847750 ccaaacagacacttaa 48847765  T

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Target: chr3; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 201 - 289
Target Start/End: Original strand, 45675751 - 45675839
Alignment:
Q  201 cttcaaatactagcttctacgataatgtgattttttgccgtgattttcatcagactctgttttacaaacgcagtactaaatagacactt 289  Q
    |||||||||||| |||||||| ||| ||| |||||| |||||||||  |||| |||| ||||| |||| ||| ||| ||| ||||||||    
T  45675751 cttcaaatactaacttctacgctaacgtggttttttaccgtgatttctatcaaactccgtttttcaaaagcaataccaaacagacactt 45675839  T

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Target: chr6 (Bit Score: 46; Significance: 5e-17; HSPs: 3)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 187 - 288
Target Start/End: Complemental strand, 32312899 - 32312798
Alignment:
Q  187 gtgatttctaaaagcttcaaatactagcttctacgataatgtgattttttgccgtgattttcatcagactctgttttacaaacgcagtactaaatagaca 286  Q
    |||||||| ||||||| || ||||||||||||||| |||  || |||||||||||||||| ||||| | || ||||| ||||||| |||| |||||||||    
T  32312899 gtgatttccaaaagctccagatactagcttctacgctaacatggttttttgccgtgatttccatcaaagtccgttttgcaaacgccgtaccaaatagaca 32312800  T
Q  287 ct 288  Q
    ||    
T  32312799 ct 32312798  T

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Target: chr6; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 172 - 269
Target Start/End: Complemental strand, 5642663 - 5642567
Alignment:
Q  172 caatacatttttactgtgatttctaaaagcttcaaatactagcttctacgataatgtgattttttgccgtgattttcatcagactctgttttacaaac 269  Q
    ||||| ||||||||  ||||||| | ||| ||||||||||| |||||||| ||  |||| |||||| |||||||||||| | |||| |||||||||||    
T  5642663 caatatatttttaccatgatttccagaagtttcaaatactaacttctacgctagcgtga-tttttgtcgtgattttcattaaactccgttttacaaac 5642567  T

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Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 232 - 272
Target Start/End: Original strand, 6368800 - 6368840
Alignment:
Q  232 tttttgccgtgattttcatcagactctgttttacaaacgca 272  Q
    ||||||||||||||||||||| |||| ||||| ||||||||    
T  6368800 tttttgccgtgattttcatcaaactccgttttgcaaacgca 6368840  T

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Target: chr5 (Bit Score: 44; Significance: 7e-16; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 171 - 290
Target Start/End: Complemental strand, 15150891 - 15150772
Alignment:
Q  171 tcaatacatttttactgtgatttctaaaagcttcaaatactagcttctacgataatgtgattttttgccgtgattttcatcagactctgttttacaaacg 270  Q
    ||||| ||||||| | || ||||||||||| ||||||||||| |||||| | ||| ||| || |||| |||||||||||||| || || |||| ||||||    
T  15150891 tcaatgcatttttgccgtaatttctaaaagtttcaaatactaacttctatgctaacgtggttgtttgtcgtgattttcatcaaaccctatttttcaaacg 15150792  T
Q  271 cagtactaaatagacactta 290  Q
    |  ||| |||||||||||||    
T  15150791 ctctaccaaatagacactta 15150772  T

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Target: chr5; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 179 - 252
Target Start/End: Complemental strand, 38153423 - 38153350
Alignment:
Q  179 tttttactgtgatttctaaaagcttcaaatactagcttctacgataatgtgattttttgccgtgattttcatca 252  Q
    ||||| |||||||||  | |||||||||||||||||||| ||| |||  |||||||||||||||| ||||||||    
T  38153423 tttttgctgtgatttgcagaagcttcaaatactagcttccacgttaaactgattttttgccgtgactttcatca 38153350  T

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Target: chr5; HSP #3
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 198 - 271
Target Start/End: Original strand, 37060345 - 37060418
Alignment:
Q  198 aagcttcaaatactagcttctacgataatgtgattttttgccgtgattttcatcagactctgttttacaaacgc 271  Q
    ||||| ||||||||| |||||||  |||  ||||||||||||||||||| ||||  |||||||||| |||||||    
T  37060345 aagctccaaatactaacttctacattaacatgattttttgccgtgatttccatccaactctgttttgcaaacgc 37060418  T

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Target: chr5; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 179 - 275
Target Start/End: Original strand, 15156555 - 15156650
Alignment:
Q  179 tttttactgtgatttctaaaagcttcaaatactagcttctacgataatgtgattttttgccgtgattttcatcagactctgttttacaaacgcagta 275  Q
    ||||| |||||||||||| || ||  |||||||| |||||||| |||  ||||||||||| || |||| ||||| |||| ||||| |||||||||||    
T  15156555 tttttgctgtgatttctagaaactcgaaatacta-cttctacgttaacatgattttttgctgtaatttccatcaaactcggttttgcaaacgcagta 15156650  T

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Target: chr7 (Bit Score: 41; Significance: 0.00000000000004; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 178 - 246
Target Start/End: Complemental strand, 10201452 - 10201384
Alignment:
Q  178 atttttactgtgatttctaaaagcttcaaatactagcttctacgataatgtgattttttgccgtgattt 246  Q
    |||||| |||||||||| ||||||| |||||||||||||||||| ||| |||||||||||  |||||||    
T  10201452 atttttgctgtgatttccaaaagctccaaatactagcttctacgctaacgtgattttttgttgtgattt 10201384  T

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Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 178 - 239
Target Start/End: Original strand, 27933540 - 27933601
Alignment:
Q  178 atttttactgtgatttctaaaagcttcaaatactagcttctacgataatgtgattttttgcc 239  Q
    |||||||| |||||||  | |||||  ||||||||||||||||| |||||||||||||||||    
T  27933540 atttttaccgtgattttcagaagctctaaatactagcttctacgctaatgtgattttttgcc 27933601  T

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Target: chr7; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 240 - 291
Target Start/End: Original strand, 36424272 - 36424323
Alignment:
Q  240 gtgattttcatcagactctgttttacaaacgcagtactaaatagacacttaa 291  Q
    ||||||||||||| |||||||||| |||| ||||||| ||| ||||||||||    
T  36424272 gtgattttcatcaaactctgttttgcaaatgcagtaccaaacagacacttaa 36424323  T

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Target: chr1 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 2)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 179 - 289
Target Start/End: Complemental strand, 43292822 - 43292712
Alignment:
Q  179 tttttactgtgatttctaaaagcttcaaatactagcttctacgataatgtgattttttgccgtgattttcatcagactctgttttacaaacgcagtacta 278  Q
    ||||||| |||||||  | ||||| ||||||||| ||| |||| |||  || |||||| ||||||||| ||||| ||||||||| |||||||| |  |||    
T  43292822 tttttaccgtgattttcagaagctccaaatactaacttttacgttaacatggttttttaccgtgatttccatcaaactctgtttgacaaacgccgagcta 43292723  T
Q  279 aatagacactt 289  Q
    |||||||||||    
T  43292722 aatagacactt 43292712  T

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Target: chr1; HSP #2
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 188 - 257
Target Start/End: Complemental strand, 30192309 - 30192240
Alignment:
Q  188 tgatttctaaaagcttcaaatactagcttctacgataatgtgattttttgccgtgattttcatcagactc 257  Q
    ||||||||||| ||| |||||||||||||||||  || || | |||||||||||||||||||||| ||||    
T  30192309 tgatttctaaatgctccaaatactagcttctacactactgcggttttttgccgtgattttcatcaaactc 30192240  T

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Target: scaffold0095 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0095
Description:

Target: scaffold0095; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 198 - 291
Target Start/End: Complemental strand, 37923 - 37830
Alignment:
Q  198 aagcttcaaatactagcttctacgataatgtgattttttgccgtgattttcatcagactctgttttacaaacgcagtactaaatagacacttaa 291  Q
    ||||| |||||||||||||||  | ||| ||| |||||||||||||||| ||||  || ||||||| ||||||| ||| |||| | ||||||||    
T  37923 aagctccaaatactagcttctttgctaacgtggttttttgccgtgatttccatcgaacactgttttgcaaacgctgtattaaacaaacacttaa 37830  T

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Target: scaffold0065 (Bit Score: 34; Significance: 0.0000000007; HSPs: 1)
Name: scaffold0065
Description:

Target: scaffold0065; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 188 - 285
Target Start/End: Original strand, 49533 - 49630
Alignment:
Q  188 tgatttctaaaagcttcaaatactagcttctacgataatgtgattttttgccgtgattttcatcagactctgttttacaaacgcagtactaaatagac 285  Q
    |||| |||| |||||  |||||||| |||||||| | |  || ||||||| |||||||||||| | |||| ||||| ||||||| |||||||||||||    
T  49533 tgatctctagaagctctaaatactaacttctacgcttacatggttttttgtcgtgattttcattaaactccgttttgcaaacgctgtactaaatagac 49630  T

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Target: chr8 (Bit Score: 34; Significance: 0.0000000007; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 198 - 291
Target Start/End: Original strand, 39396878 - 39396971
Alignment:
Q  198 aagcttcaaatactagcttctacgataatgtgattttttgccgtgattttcatcagactctgttttacaaacgcagtactaaatagacacttaa 291  Q
    ||||| |||||||||||||||  | ||| ||| |||||||||||||||| ||||  || ||||||| ||||||| ||| |||| | ||||||||    
T  39396878 aagctccaaatactagcttctttgctaacgtggttttttgccgtgatttccatcgaacactgttttgcaaacgctgtattaaacaaacacttaa 39396971  T

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Target: chr8; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 198 - 269
Target Start/End: Complemental strand, 41146215 - 41146144
Alignment:
Q  198 aagcttcaaatactagcttctacgataatgtgattttttgccgtgattttcatcagactctgttttacaaac 269  Q
    ||||| |||||||||| ||||||| ||| ||| ||||||||||||||||  |||| |||| ||||| |||||    
T  41146215 aagctccaaatactagtttctacgttaacgtggttttttgccgtgatttctatcaaactccgttttgcaaac 41146144  T

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