View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6417_low_5 (Length: 378)
Name: NF6417_low_5
Description: NF6417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6417_low_5 |
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Alignment Details
Target: chr4 (Bit Score: 310; Significance: 1e-174; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 310; E-Value: 1e-174
Query Start/End: Original strand, 1 - 340
Target Start/End: Original strand, 40654437 - 40654772
Alignment:
| Q |
1 |
gttgatactataacaacaagtatagaaaataattataccctttatacaaattaaaccaaaaaagaaatgggtgaatggaagcaatatcgttatcaagaga |
100 |
Q |
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| T |
40654437 |
gttgatactataacaacaagtatataaaataatt-taccctttatacaaattaaaccaaaaaagaaatgggtgaatggaagcaatatcgttatcaagaga |
40654535 |
T |
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| Q |
101 |
taatgacttttcatggcgctacatctaccgtcaagtaatcggacaaaacacttttctctattttttcaatcgaagtgaaagtgattgtgtcatcattcat |
200 |
Q |
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| T |
40654536 |
taatgacttttcatggcgctacatctaccgtcaagtaatcggacaaaacacttttctctattttttcaatcgaagtgaaagtgattgtgtcatcattcat |
40654635 |
T |
|
| Q |
201 |
caagcgggacccaacaacacttccaaaaggaaattcttgaaaagtacttggtcagtttacaagctcgtttctcccttcgcaattcattcacattcacatg |
300 |
Q |
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| T |
40654636 |
caagcgggacc---caacacttccaaaaggaaattcttgaaaagtacttggtcagtttacaagctcgtttctcccttcgcaatccattcacattcacatg |
40654732 |
T |
|
| Q |
301 |
tatatggtaaagcaaccacatagctcaatataaactcctg |
340 |
Q |
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| T |
40654733 |
tatatggtaaagcaaccacatagctcaatataaactcctg |
40654772 |
T |
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