View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6417_low_6 (Length: 337)
Name: NF6417_low_6
Description: NF6417
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6417_low_6 |
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Alignment Details
Target: chr6 (Bit Score: 216; Significance: 1e-118; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 216; E-Value: 1e-118
Query Start/End: Original strand, 25 - 330
Target Start/End: Original strand, 34244095 - 34244400
Alignment:
| Q |
25 |
tagatggaagcttgtctatgatgcgtaggtagagaaacgatacctggtaacggtacaggtacgtgtacagatacaggtaatgtggtacataataccaaat |
124 |
Q |
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| T |
34244095 |
tagatggaagcttgtctatgatgcgtaggtagagaaacgatacctggtaacggtacaggtacgtgtacagatacaggtaatgtggtacataataccaaat |
34244194 |
T |
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| Q |
125 |
tttggtataggtacgttgatataaatatcaaaaagttgatttttcaattgaattactattgttgttgtaaaaacatgcttagaaaaaatatcaattnnnn |
224 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34244195 |
tttggtataggtacgttgatataaatatcaaaaagttgatttttcaattgaattactattgttgttgtaaaaacatgcttagaaaaaatatcaattataa |
34244294 |
T |
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| Q |
225 |
nnnnnnnnnnnnnnnnnnnctagtcatattttgatcacgtgtttaacagcacttatatcattatgttgctttagagttttacnnnnnnngtgcactccct |
324 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34244295 |
taaaataataataataatactagtcatattttgatcacgtgtttaacagcacttatatcattatgttgctttagagttttactttttttgtgcactccct |
34244394 |
T |
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| Q |
325 |
ttgcta |
330 |
Q |
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|||||| |
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| T |
34244395 |
ttgcta |
34244400 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 34; Significance: 0.0000000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 171 - 212
Target Start/End: Original strand, 9448023 - 9448064
Alignment:
| Q |
171 |
attgaattactattgttgttgtaaaaacatgcttagaaaaaa |
212 |
Q |
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| T |
9448023 |
attgaattactattattgttgtaaaaacatgcttacaaaaaa |
9448064 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 212
Target Start/End: Complemental strand, 10355976 - 10355946
Alignment:
| Q |
182 |
attgttgttgtaaaaacatgcttagaaaaaa |
212 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
10355976 |
attgttgttgtaaaaacatgcttagaaaaaa |
10355946 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 182 - 212
Target Start/End: Original strand, 2044456 - 2044486
Alignment:
| Q |
182 |
attgttgttgtaaaaacatgcttagaaaaaa |
212 |
Q |
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||||||||||||||||||||||||||||||| |
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| T |
2044456 |
attgttgttgtaaaaacatgcttagaaaaaa |
2044486 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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