View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6418_high_6 (Length: 255)
Name: NF6418_high_6
Description: NF6418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6418_high_6 |
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| [»] scaffold0653 (2 HSPs) |
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Alignment Details
Target: chr7 (Bit Score: 186; Significance: 1e-101; HSPs: 5)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 9 - 246
Target Start/End: Original strand, 9299787 - 9300024
Alignment:
| Q |
9 |
acatcatcaaattaatcaaatcgacgaattaccaagtcaaaacaacataatactacnnnnnnnngttgtgtggattcatcaggttcacttgtggtgtctt |
108 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
9299787 |
acatcatcaaattcatcaaatcgacgaattaccaagtcaaaacgacataatactacaaaaaaaagttgtgtggactcatcaggttcacttgtggtgtctt |
9299886 |
T |
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| Q |
109 |
gttatgttgattcatcaataatgagtgtggtagatccttcatacattcagttcctaccataagaattcagacaattacttcagatggaaagcaaaacgaa |
208 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||| |
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| T |
9299887 |
gtcatgttgattcatcaataatgagtgtggtagatccttcatacattcagttcctaccatcagaattcagacaattacttctgatggaaaccaaaacgaa |
9299986 |
T |
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| Q |
209 |
aataatattcaaggaggtaatagtggaaatgatgatgt |
246 |
Q |
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|||||||||||||||||||||||||||||||||||||| |
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| T |
9299987 |
aataatattcaaggaggtaatagtggaaatgatgatgt |
9300024 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 9 - 246
Target Start/End: Original strand, 9304336 - 9304573
Alignment:
| Q |
9 |
acatcatcaaattaatcaaatcgacgaattaccaagtcaaaacaacataatactacnnnnnnnngttgtgtggattcatcaggttcacttgtggtgtctt |
108 |
Q |
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||||||||||||| ||||||||||||||||||||||||||||| |||||||||||| |||||||||| ||||||||||||||||||||||||| |
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| T |
9304336 |
acatcatcaaattcatcaaatcgacgaattaccaagtcaaaacgacataatactacaaaaaaaagttgtgtggactcatcaggttcacttgtggtgtctt |
9304435 |
T |
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| Q |
109 |
gttatgttgattcatcaataatgagtgtggtagatccttcatacattcagttcctaccataagaattcagacaattacttcagatggaaagcaaaacgaa |
208 |
Q |
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|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||| |
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| T |
9304436 |
gtcatgttgattcatcaataatgagtgtggtagatccttcatacattcagttcctaccatcagaattcagacaattacttctgatggaaaccaaaacgaa |
9304535 |
T |
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| Q |
209 |
aataatattcaaggaggtaatagtggaaatgatgatgt |
246 |
Q |
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| T |
9304536 |
aataatattcaaggaggtaatagtggaaatgatgatgt |
9304573 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 111; E-Value: 4e-56
Query Start/End: Original strand, 73 - 246
Target Start/End: Original strand, 9296355 - 9296526
Alignment:
| Q |
73 |
gttgtgtggattcatcaggttcacttgtggtgtcttgttatgttgattcatcaataatgagtgtggtagatccttcatacattcagttcctaccataaga |
172 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| || ||||||| || |
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| T |
9296355 |
gttgtgtggattcatcaggttcacttgtggtgtcttgtcctgttgattcatcaataatgagtgaggtagatccttcatacattcaattactaccatcagg |
9296454 |
T |
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| Q |
173 |
attcagacaattacttcagatggaaagcaaaacgaaaataatattcaaggaggtaatagtggaaatgatgatgt |
246 |
Q |
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| T |
9296455 |
tttc--ataattacttctgatggaaagcaaaatgataataatattcaaggaggtaatagtggtaatgatgatgt |
9296526 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 103; E-Value: 2e-51
Query Start/End: Original strand, 73 - 246
Target Start/End: Original strand, 9286563 - 9286734
Alignment:
| Q |
73 |
gttgtgtggattcatcaggttcacttgtggtgtcttgttatgttgattcatcaataatgagtgtggtagatccttcatacattcagttcctaccataaga |
172 |
Q |
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|||||||||| ||||||||||||||||||||||||||| | ||||||||||||||||||||| || |||||||||||||||||| || ||||||| || |
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| T |
9286563 |
gttgtgtggactcatcaggttcacttgtggtgtcttgtcctattgattcatcaataatgagtgaggcagatccttcatacattcaattactaccatcagg |
9286662 |
T |
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| Q |
173 |
attcagacaattacttcagatggaaagcaaaacgaaaataatattcaaggaggtaatagtggaaatgatgatgt |
246 |
Q |
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| T |
9286663 |
tttc--ataattacttctgatggaaagcaaaatgaaaataatattcaaggaggtaatagtggtaatgatgatgt |
9286734 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 43
Target Start/End: Original strand, 9247075 - 9247109
Alignment:
| Q |
9 |
acatcatcaaattaatcaaatcgacgaattaccaa |
43 |
Q |
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| T |
9247075 |
acatcatcaaattaatcaaatcgacgaagtaccaa |
9247109 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0653 (Bit Score: 115; Significance: 2e-58; HSPs: 2)
Name: scaffold0653
Description:
Target: scaffold0653; HSP #1
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 73 - 246
Target Start/End: Complemental strand, 1754 - 1583
Alignment:
| Q |
73 |
gttgtgtggattcatcaggttcacttgtggtgtcttgttatgttgattcatcaataatgagtgtggtagatccttcatacattcagttcctaccataaga |
172 |
Q |
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|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||| || ||||||| || |
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| T |
1754 |
gttgtgtggattcatcaggttcacttgtggtgtcttgtcctgttgattcatcaataatgagtgaggtagatccttcatacattcaattactaccatcagg |
1655 |
T |
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| Q |
173 |
attcagacaattacttcagatggaaagcaaaacgaaaataatattcaaggaggtaatagtggaaatgatgatgt |
246 |
Q |
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||| | ||||||||| |||||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |
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| T |
1654 |
tttc--ataattacttctgatggaaagcaaaatgaaaataatattcaaggaggtaatagtggtaatgatgatgt |
1583 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0653; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 9 - 43
Target Start/End: Complemental strand, 6813 - 6779
Alignment:
| Q |
9 |
acatcatcaaattaatcaaatcgacgaattaccaa |
43 |
Q |
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|||||||||||||||||||||||||||| |||||| |
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| T |
6813 |
acatcatcaaattaatcaaatcgacgaagtaccaa |
6779 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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