View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6418_low_2 (Length: 332)
Name: NF6418_low_2
Description: NF6418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6418_low_2 |
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Alignment Details
Target: chr4 (Bit Score: 94; Significance: 7e-46; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 94; E-Value: 7e-46
Query Start/End: Original strand, 153 - 323
Target Start/End: Complemental strand, 5930690 - 5930521
Alignment:
| Q |
153 |
ttaatttagtttttgcatgtaaatgtcggcctctatatcttaatctggtttttggggttttttatggtgtgttgttttgggtgtcctgtatatatgtggc |
252 |
Q |
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| T |
5930690 |
ttaatttggtttttgcatgtaaatgttggcctctatatcttaatccggtttttggggttttttatagtgtgttgttttaggtgtcccgtatatatgcggc |
5930591 |
T |
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| Q |
253 |
gctcttattgtannnnnnnnccctttttcccacgagttctagtgcttcttgcatacctcgtcgagaataat |
323 |
Q |
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| T |
5930590 |
gcttttattgta-ttttttccccttttttccgcgaattctagtgcttcttgtatacctcgtcgagaataat |
5930521 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 74; E-Value: 6e-34
Query Start/End: Original strand, 68 - 149
Target Start/End: Complemental strand, 5930817 - 5930736
Alignment:
| Q |
68 |
atccttaaatttttgatacaatatcgttataaacatatttatttgtatgtaggtggcaaaatagattcagtcgtatgagtaa |
149 |
Q |
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| T |
5930817 |
atccttaaattttcgatacaatattgttataaacatatttatttgtatgtaggtggcaaaatagattcagtcgtatgagtaa |
5930736 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 68; E-Value: 2e-30
Query Start/End: Original strand, 14 - 81
Target Start/End: Complemental strand, 5930900 - 5930833
Alignment:
| Q |
14 |
catccttaacccaattgtttgctttatattcttctctaatttgttatatttaagatccttaaattttt |
81 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
5930900 |
catccttaacccaattgtttgctttatattcttctctaatttgttatatttaagatccttaaattttt |
5930833 |
T |
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