View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6418_low_4 (Length: 264)
Name: NF6418_low_4
Description: NF6418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6418_low_4 |
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Alignment Details
Target: chr4 (Bit Score: 90; Significance: 1e-43; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 90; E-Value: 1e-43
Query Start/End: Original strand, 134 - 248
Target Start/End: Original strand, 24897868 - 24897982
Alignment:
| Q |
134 |
gacataaaaaagacatgtagtcacaatctaaaagaagttaatgctgtaactatttcttttaagaaataaattggagnnnnnnncacttgtcataaatgta |
233 |
Q |
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| T |
24897868 |
gacattaaaaagacatgtagtcacaatctaaaagaagttaatgctgtaactatttcttttaagaaataaattggagaaaaaaacacttgtcataaatgta |
24897967 |
T |
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| Q |
234 |
gaagacgataatatt |
248 |
Q |
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| T |
24897968 |
gaagacgataatatt |
24897982 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 47; E-Value: 6e-18
Query Start/End: Original strand, 49 - 107
Target Start/End: Original strand, 24897780 - 24897838
Alignment:
| Q |
49 |
tttaattttgcctaaattaaaacataccactttttagaatgaataaaaatgtacaaaag |
107 |
Q |
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| T |
24897780 |
tttaattttgtctaaattaaaacagatcactttttagaatgaataaaaatgtacaaaag |
24897838 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 12 - 53
Target Start/End: Original strand, 24896943 - 24896984
Alignment:
| Q |
12 |
acagacgatacttaaaattaagttaaatgacgaattgtttaa |
53 |
Q |
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| T |
24896943 |
acagactatacttaaaattaagttaaatgatgaattatttaa |
24896984 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 32; Significance: 0.000000006; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 24 - 67
Target Start/End: Complemental strand, 8322280 - 8322237
Alignment:
| Q |
24 |
taaaattaagttaaatgacgaattgtttaattttgcctaaatta |
67 |
Q |
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| T |
8322280 |
taaaattaagttaaatgacgaaatgtgtaattttgcctatatta |
8322237 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 20 - 62
Target Start/End: Complemental strand, 13862533 - 13862491
Alignment:
| Q |
20 |
tacttaaaattaagttaaatgacgaattgtttaattttgccta |
62 |
Q |
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| T |
13862533 |
tacttaaaattaagttaaaggacgaattgtgtaattttaccta |
13862491 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 30; Significance: 0.00000009; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 24 - 61
Target Start/End: Original strand, 27523264 - 27523301
Alignment:
| Q |
24 |
taaaattaagttaaatgacgaattgtttaattttgcct |
61 |
Q |
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| T |
27523264 |
taaaattaagttaaaggacgaattgtgtaattttgcct |
27523301 |
T |
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