View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6418_low_8 (Length: 228)
Name: NF6418_low_8
Description: NF6418
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6418_low_8 |
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Alignment Details
Target: chr1 (Bit Score: 214; Significance: 1e-117; HSPs: 7)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 34304784 - 34305005
Alignment:
| Q |
1 |
cacttctatctttagctcatcttttctcaaccctggcacgtccatcgttatgacatgtccttctggagtttccttccagtctactttaaccggtgacagt |
100 |
Q |
| |
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|||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
34304784 |
cacttctatctttatctcatcttttctcaaccctggcacgtccatcgttatgacatgtccttctggagtttccttccagtctactttaaccggtgacagt |
34304883 |
T |
|
| Q |
101 |
gtcattgctggttggtctttctcaactccaaaggaggtttgtttcatgacgcaaaatggatctgggaaatgatcggataagagagggacgggggaatcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
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| T |
34304884 |
gtcattgctggttggtctttctcaactccaaaggaggtttgtttcatgacgcaaaatggatctgggaaatgatcggataagagagggatgggggaatcca |
34304983 |
T |
|
| Q |
201 |
tggatggtattggtgaaccttt |
222 |
Q |
| |
|
|||||||||||||||||||||| |
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|
| T |
34304984 |
tggatggtattggtgaaccttt |
34305005 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 132; E-Value: 1e-68
Query Start/End: Original strand, 1 - 212
Target Start/End: Complemental strand, 33426287 - 33426076
Alignment:
| Q |
1 |
cacttctatctttagctcatcttttctcaaccctggcacgtccatcgttatgacatgtccttctggagtttccttccagtctactttaaccggtgacagt |
100 |
Q |
| |
|
|||||||||||||| || ||||||||||||||| |||||||||||| ||| |||||| ||||||||||||||||||||||||||||||||||||||| | |
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| T |
33426287 |
cacttctatctttatcttatcttttctcaaccccggcacgtccatcactataacatgttcttctggagtttccttccagtctactttaaccggtgacaat |
33426188 |
T |
|
| Q |
101 |
gtcattgctggttggtctttctcaactccaaaggaggtttgtttcatgacgcaaaatggatctgggaaatgatcggataagagagggacgggggaatcca |
200 |
Q |
| |
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||||| |||| |||||||||||||||||||||| ||||||||| |||||| |||||||| |||||||||||||| | |||||||||| |||||||||| |
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| T |
33426187 |
gtcatggctgattggtctttctcaactccaaagtaggtttgttccatgacacaaaatgggtctgggaaatgatcagctaagagagggtttggggaatcca |
33426088 |
T |
|
| Q |
201 |
tggatggtattg |
212 |
Q |
| |
|
||||||| |||| |
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|
| T |
33426087 |
tggatggcattg |
33426076 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 1 - 174
Target Start/End: Complemental strand, 34312012 - 34311839
Alignment:
| Q |
1 |
cacttctatctttagctcatcttttctcaaccctggcacgtccatcgttatgacatgtccttctggagtttccttccagtctactttaaccggtgacagt |
100 |
Q |
| |
|
|||||||||||||| |||||||||||| | |||||||||||| | | |||| |||||||| |||||||||||||||||||||||| || | ||||||||| |
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| T |
34312012 |
cacttctatctttatctcatcttttcttatccctggcacgtcgaacattataacatgtccctctggagtttccttccagtctactctagctggtgacagt |
34311913 |
T |
|
| Q |
101 |
gtcattgctggttggtctttctcaactccaaaggaggtttgtttcatgacgcaaaatggatctgggaaatgatc |
174 |
Q |
| |
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| ||| | ||||| || ||| ||||||||||||| | |||||| | ||| | ||||||||| |||||| |||| |
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|
| T |
34311912 |
gacatggatggttcgtttttttcaactccaaaggggatttgttctaagacacgaaatggatcggggaaacgatc |
34311839 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 2 - 105
Target Start/End: Original strand, 34322960 - 34323063
Alignment:
| Q |
2 |
acttctatctttagctcatcttttctcaaccctggcacgtccatcgttatgacatgtccttctggagtttccttccagtctactttaaccggtgacagtg |
101 |
Q |
| |
|
||||||||||||| |||||||||||| | |||||| || |||| | |||| |||||||| |||||||||||||||||||||||| || | ||||||| || |
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|
| T |
34322960 |
acttctatctttatctcatcttttcttatccctggaacatccaacattataacatgtccatctggagtttccttccagtctactctagctggtgacattg |
34323059 |
T |
|
| Q |
102 |
tcat |
105 |
Q |
| |
|
|||| |
|
|
| T |
34323060 |
tcat |
34323063 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 51; E-Value: 2e-20
Query Start/End: Original strand, 1 - 204
Target Start/End: Complemental strand, 34314450 - 34314256
Alignment:
| Q |
1 |
cacttctatctttagctcatcttttctcaaccctggcacgtccatcgttatgacatgtccttctggagtttccttccagtctactttaaccggtgacagt |
100 |
Q |
| |
|
|||||||||||| | |||||||||||| || |||||||| || ||| |||| |||||| | |||| |||||||||||| |||||| || || | |
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|
| T |
34314450 |
cacttctatcttgatctcatcttttctaaatcctggcacatcaatcattataacatgttcatctgaagtttccttccaatctactata------ga---t |
34314360 |
T |
|
| Q |
101 |
gtcattgctggttggtctttctcaactccaaaggaggtttgtttcatgacgcaaaatggatctgggaaatgatcggataagagagggacgggggaatcca |
200 |
Q |
| |
|
||||| |||| ||||||| ||||||||||| ||| | |||||| | ||||||||||| | |||||||||||||| | ||||||||| ||| ||||||| |
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|
| T |
34314359 |
gtcatggctgattggtctatctcaactccataggggatttgttccgtgacgcaaaatcggtctgggaaatgatcagctaagagaggattgggagaatcca |
34314260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000005
Query Start/End: Original strand, 8 - 85
Target Start/End: Original strand, 34317310 - 34317387
Alignment:
| Q |
8 |
atctttagctcatcttttctcaaccctggcacgtccatcgttatgacatgtccttctggagtttccttccagtctact |
85 |
Q |
| |
|
||||||| |||| ||||||||||||| |||||||||||| |||| |||||| | |||| |||||||||||| |||||| |
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|
| T |
34317310 |
atctttatctcaccttttctcaaccccggcacgtccatcattataacatgttcatctgaagtttccttccaatctact |
34317387 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 41; E-Value: 0.00000000000002
Query Start/End: Original strand, 112 - 204
Target Start/End: Original strand, 34317390 - 34317482
Alignment:
| Q |
112 |
ttggtctttctcaactccaaaggaggtttgtttcatgacgcaaaatggatctgggaaatgatcggataagagagggacgggggaatccatgga |
204 |
Q |
| |
|
||||||||||||||||||||||| | ||| || |||||||||| || | |||||||||||||| | ||||||||| ||| ||||||||||| |
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|
| T |
34317390 |
ttggtctttctcaactccaaaggggatttcttccatgacgcaatattggtctgggaaatgatcagctaagagaggattgggagaatccatgga |
34317482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 50; Significance: 9e-20; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 50; E-Value: 9e-20
Query Start/End: Original strand, 1 - 222
Target Start/End: Original strand, 25651421 - 25651633
Alignment:
| Q |
1 |
cacttctatctttagctcatcttttctcaaccctggcacgtccatcgttatgacatgtccttctggagtttccttccagtctactttaaccggtgacagt |
100 |
Q |
| |
|
|||| ||||| ||| ||||||||||||||||| |||| ||||| |||| |||||| | |||| |||||||||||| |||||| || | | |
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|
| T |
25651421 |
cactcctatccttatctcatcttttctcaacctcaccacgcccatcattataacatgttcatctgaagtttccttccaatctactatatc---------t |
25651511 |
T |
|
| Q |
101 |
gtcattgctggttggtctttctcaactccaaaggaggtttgtttcatgacgcaaaatggatctgggaaatgatcggataagagagggacgggggaatcca |
200 |
Q |
| |
|
||||| |||| |||||||||||||| |||||||| |||||||| | ||| |||||||| | |||||||||||| | ||||||||| ||| ||||||| |
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|
| T |
25651512 |
gtcatggctgattggtctttctcaattccaaagggggtttgttccgcgacccaaaatgggtttgggaaatgatcagctaagagaggattgggagaatcca |
25651611 |
T |
|
| Q |
201 |
tggatggtattggtgaaccttt |
222 |
Q |
| |
|
|||| |||| | |||||||||| |
|
|
| T |
25651612 |
tggaaggtaatagtgaaccttt |
25651633 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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