View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6419_high_1 (Length: 324)

Name: NF6419_high_1
Description: NF6419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6419_high_1
NF6419_high_1
[»] chr7 (4 HSPs)
chr7 (10-318)||(35523724-35524032)
chr7 (10-92)||(35518126-35518208)
chr7 (199-271)||(43359083-43359155)
chr7 (116-144)||(37025637-37025665)
[»] chr1 (4 HSPs)
chr1 (198-249)||(15066041-15066092)
chr1 (198-248)||(34311235-34311285)
chr1 (203-272)||(13276472-13276541)
chr1 (198-271)||(19989347-19989419)
[»] chr3 (3 HSPs)
chr3 (199-248)||(46135636-46135685)
chr3 (116-144)||(23045331-23045359)
chr3 (198-270)||(48034808-48034879)


Alignment Details
Target: chr7 (Bit Score: 249; Significance: 1e-138; HSPs: 4)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 10 - 318
Target Start/End: Original strand, 35523724 - 35524032
Alignment:
Q  10 acatcatcaaatggcaccgtcgtgaaaaccgttgggaggactttgccgtcacttcttctccacacaggttaacactcacaacctcttactttgtcacact 109  Q
    |||||||||||||||||| || | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||    
T  35523724 acatcatcaaatggcaccatcatcaaaaccgttgggaggactttgccgtcacttcttctccacacaggttaacactcacaacctctttctttgtcacact 35523823  T
Q  110 atctatgagaaattcttaggtgaactctcacccaatacgtccttcttttggctgagagttcacacacaaaagaaatttagnnnnnnnngtctctcacaca 209  Q
    |||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||         |||||||||| |    
T  35523824 atctatgagaaattcttaggtgaactctcacccaatacgttcttcttttgggtgagagttcacacacaaaagaaatttaattttttttgtctctcacata 35523923  T
Q  210 ctctcccatgaggatggtacattgtgtgtatggagaaaaggtagtcaataaaacattatcctatgaaaagttgatacggttgatttggcagaggtgatga 309  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  35523924 ctctcccatgaggatggtacattgtgtgtatggagaaaaggtagtcaataaaacattatcctacgaaaagttgatacggttgatttggcagaggtgatga 35524023  T
Q  310 tgatgatgt 318  Q
    |||||||||    
T  35524024 tgatgatgt 35524032  T

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Target: chr7; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 10 - 92
Target Start/End: Original strand, 35518126 - 35518208
Alignment:
Q  10 acatcatcaaatggcaccgtcgtgaaaaccgttgggaggactttgccgtcacttcttctccacacaggttaacactcacaacc 92  Q
    ||||||||||||||||||||| ||| |||||||||| |||||||||||||||||||||| ||||||||||||||||| |||||    
T  35518126 acatcatcaaatggcaccgtcatgagaaccgttgggtggactttgccgtcacttcttcttcacacaggttaacactctcaacc 35518208  T

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Target: chr7; HSP #3
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 199 - 271
Target Start/End: Original strand, 43359083 - 43359155
Alignment:
Q  199 tctctcacacactctcccatgaggatggtacattgtgtgtatggagaaaaggtagtcaataaaacattatcct 271  Q
    |||||||||||||||| ||||||| || |||||||||||||||||||||| |  |||||| ||||||||||||    
T  43359083 tctctcacacactctcacatgagggtgatacattgtgtgtatggagaaaatggtgtcaatgaaacattatcct 43359155  T

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Target: chr7; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 144
Target Start/End: Complemental strand, 37025665 - 37025637
Alignment:
Q  116 gagaaattcttaggtgaactctcacccaa 144  Q
    |||||||||||||||||||||||||||||    
T  37025665 gagaaattcttaggtgaactctcacccaa 37025637  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 198 - 249
Target Start/End: Complemental strand, 15066092 - 15066041
Alignment:
Q  198 gtctctcacacactctcccatgaggatggtacattgtgtgtatggagaaaag 249  Q
    ||||||||||||||||| ||||||  ||||||||||| |||||||| |||||    
T  15066092 gtctctcacacactctcacatgagagtggtacattgtatgtatggaaaaaag 15066041  T

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Target: chr1; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 198 - 248
Target Start/End: Complemental strand, 34311285 - 34311235
Alignment:
Q  198 gtctctcacacactctcccatgaggatggtacattgtgtgtatggagaaaa 248  Q
    ||||||||| ||||||| | ||||| ||||||||| |||||||||||||||    
T  34311285 gtctctcacgcactctcacgtgagggtggtacattatgtgtatggagaaaa 34311235  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 203 - 272
Target Start/End: Complemental strand, 13276541 - 13276472
Alignment:
Q  203 tcacacactctcccatgaggatggtacattgtgtgtatggagaaaaggtagtcaataaaacattatccta 272  Q
    |||||||||||| |||| |  |||||||| ||||||||||||||||||  ||  || |||||||||||||    
T  13276541 tcacacactctcacatgggagtggtacatagtgtgtatggagaaaagggtgttcatgaaacattatccta 13276472  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 198 - 271
Target Start/End: Original strand, 19989347 - 19989419
Alignment:
Q  198 gtctctcacacactctcccatgaggatggtacattgtgtgtatggagaaaaggtagtcaataaaacattatcct 271  Q
    ||||||||||||||||| ||||||  ||||||| ||||||||| ||||||||   ||| || ||||||||||||    
T  19989347 gtctctcacacactctcacatgagagtggtacaatgtgtgtat-gagaaaagagtgtctatgaaacattatcct 19989419  T

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Target: chr3 (Bit Score: 30; Significance: 0.0000001; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 199 - 248
Target Start/End: Original strand, 46135636 - 46135685
Alignment:
Q  199 tctctcacacactctcccatgaggatggtacattgtgtgtatggagaaaa 248  Q
    |||||||||||||||| |||  || ||||||| |||||||||||||||||    
T  46135636 tctctcacacactctcacataggggtggtacaatgtgtgtatggagaaaa 46135685  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 116 - 144
Target Start/End: Complemental strand, 23045359 - 23045331
Alignment:
Q  116 gagaaattcttaggtgaactctcacccaa 144  Q
    |||||||||||||||||||||||||||||    
T  23045359 gagaaattcttaggtgaactctcacccaa 23045331  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 198 - 270
Target Start/End: Complemental strand, 48034879 - 48034808
Alignment:
Q  198 gtctctcacacactctcccatgaggatggtacattgtgtgtatggagaaaaggtagtcaataaaacattatcc 270  Q
    ||||||||||||||||| ||||| | ||||||| |||||||||||| |||||   ||  ||||||||||||||    
T  48034879 gtctctcacacactctcacatgaag-tggtacaatgtgtgtatggaaaaaagtgtgtacataaaacattatcc 48034808  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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