View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6419_low_1 (Length: 474)
Name: NF6419_low_1
Description: NF6419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6419_low_1 |
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Alignment Details
Target: chr7 (Bit Score: 356; Significance: 0; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 356; E-Value: 0
Query Start/End: Original strand, 1 - 465
Target Start/End: Original strand, 27430447 - 27430907
Alignment:
| Q |
1 |
tgcacctgtaatagttcctgcaaagcatata--aataaatatatattcccatagtgaaaattaattaatttgaaaatcaataattaacatgataatgtgt |
98 |
Q |
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| T |
27430447 |
tgcacctgtaatagttcctgcaaagcatatataaataaatatatattcccatagtgaaaattaattaatttgaaaatcaataattaacatgataatttgt |
27430546 |
T |
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| Q |
99 |
tcaaatagtgaagttagtgcttaattaaactcgtaaaannnnnnnnnnnnnnnccttggaaaatcggtgtgcaagatcnnnnnnngcccatactttctcc |
198 |
Q |
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| T |
27430547 |
tcaaatagtgaagtttgtgcttaattaaactcgtaaaaatatatata------ccttggaaaatcggtgtgcaagatctttttttgcccatactttctcc |
27430640 |
T |
|
| Q |
199 |
attgatgaccatcttccacaggacgatcagactccttctcccatgtttgtgaaacttttctgaaaaataattacataattggataagttttctaattgta |
298 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
27430641 |
attgatgaccatcttccacaggacgatcagactccttctcccatgtttgtgaaacttttctgaaaaataattacataattggataagttttctaattgta |
27430740 |
T |
|
| Q |
299 |
ccnnnnnnnctcaaaaccaagtaggactatgaaacaatcaaataattttactgtgtcagccaaaaccataataactagaggaaacaacaaaataaataaa |
398 |
Q |
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| T |
27430741 |
ccaaaaaaactcaaaaccaagtaggactatgaaacaatcaaataattttactgtgtcagccaaaaccataataactagaggaaacaacaaaataaataaa |
27430840 |
T |
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| Q |
399 |
aatgagagggcataattacaacctagtcctttcatcacatgtagtggatatgatgacaatgatgatg |
465 |
Q |
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| T |
27430841 |
aatgagagggcataattacaacctagtcctttcatcacatgtagtggatatgatgacaatgatgatg |
27430907 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 152 - 260
Target Start/End: Original strand, 27448560 - 27448668
Alignment:
| Q |
152 |
ccttggaaaatcggtgtgcaagatcnnnnnnngcccatactttctccattgatgaccatcttccacaggacgatcagactccttctcccatgtttgtgaa |
251 |
Q |
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||||||||||||||||||||||||| | |||||||||||||| |||||||||||||| |||| | ||||||||||||||||||||||||||| |
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| T |
27448560 |
ccttggaaaatcggtgtgcaagatctttttttggccatactttctccactgatgaccatcttcttcaggctgttcagactccttctcccatgtttgtgaa |
27448659 |
T |
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| Q |
252 |
acttttctg |
260 |
Q |
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| T |
27448660 |
atttttctg |
27448668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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