View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6419_low_2 (Length: 442)
Name: NF6419_low_2
Description: NF6419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6419_low_2 |
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Alignment Details
Target: chr5 (Bit Score: 407; Significance: 0; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 407; E-Value: 0
Query Start/End: Original strand, 12 - 434
Target Start/End: Original strand, 20632913 - 20633335
Alignment:
| Q |
12 |
atcatcaccaccaatgtataaaccatttggtattgaaacaacttcaataccattcacaaatgcatatgcatcagaatcatttgatgatggagtgaaagta |
111 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20632913 |
atcatcaccaccaatgtataaaccatttggtattgaaacaacttcaataccattcacaaatgcatatgcatcagaatcatttgatgatggagtgaaagta |
20633012 |
T |
|
| Q |
112 |
agttccaaactatttccttttacatgcacaatgaattctttcattaaatatgctatgttaaagtaatctacatttagagaaacactaaagttatgcagaa |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20633013 |
agttccaaactatttccttttacatgcacaatgaattctttcattaaatatgctaagttaaagtaatctacatttagagaaacactaaagttatgcagaa |
20633112 |
T |
|
| Q |
212 |
gagtgaagttaccagcagtgacagataagaaagcttttgagatgttgaagtccaaataagaataagggtagaaatgaaggcgaatgaatttcggaccgga |
311 |
Q |
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| T |
20633113 |
gagtgaagttaccggcagtgacagataagaaagcttttgagatgttgaagtccaaataagaaaaagggtagaaatgaaggcgaatgaatttcggaccgga |
20633212 |
T |
|
| Q |
312 |
agttacattaaatctatatgtaaattgagattgaaagattctagctgtcatataaggaacttcaggaatggattcaagatttgaagaaagtgcttttgct |
411 |
Q |
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| T |
20633213 |
agttacattaaatctatatgtaaattgagattgaaagattctagctgtcatataaggaacttcaggaatggattcaagatttgaagaaagtgcttttgct |
20633312 |
T |
|
| Q |
412 |
gttaaggacttgttgatgatgtc |
434 |
Q |
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| T |
20633313 |
gttaaggacttattgatgatgtc |
20633335 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 382; E-Value: 0
Query Start/End: Original strand, 12 - 431
Target Start/End: Original strand, 20649012 - 20649428
Alignment:
| Q |
12 |
atcatcaccaccaatgtataaaccatttggtattgaaacaacttcaataccattcacaaatgcatatgcatcagaatcatttgatgatggagtgaaagta |
111 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20649012 |
atcatcaccaccaatgtataaaccatttggtattgaaacaacttcaataccattcacaaatgcatatgcatcagaatcatttgatgatggagtgaaagta |
20649111 |
T |
|
| Q |
112 |
agttccaaactatttccttttacatgcacaatgaattctttcattaaatatgctatgttaaagtaatctacatttagagaaacactaaagttatgcagaa |
211 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20649112 |
agttccaaactatttccttttacatgcacaatgaattctttcattaaatatgctaagttaaagtaatctacatttagagaaacactaaagttatgcagaa |
20649211 |
T |
|
| Q |
212 |
gagtgaagttaccagcagtgacagataagaaagcttttgagatgttgaagtccaaataagaataagggtagaaatgaaggcgaatgaatttcggaccgga |
311 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| ||||| | |||||||||| ||||||||||||||||||||||||||||||||||||| |
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| T |
20649212 |
gagtgaagttaccagcagtgacagataagaaagcttttgagatattgaaattcaaataagaaaaagggtagaaatgaaggcgaatgaatttcggaccgga |
20649311 |
T |
|
| Q |
312 |
agttacattaaatctatatgtaaattgagattgaaagattctagctgtcatataaggaacttcaggaatggattcaagatttgaagaaagtgcttttgct |
411 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||||||||| |
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| T |
20649312 |
agttacattaaatctatatgtaaattgagattgaaagattctagctgtcatataaggaacttcaggaatggattgaagatttgaag---gtgcttttgct |
20649408 |
T |
|
| Q |
412 |
gttaaggacttgttgatgat |
431 |
Q |
| |
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|||||||||||||||||||| |
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|
| T |
20649409 |
gttaaggacttgttgatgat |
20649428 |
T |
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