View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6419_low_3 (Length: 339)
Name: NF6419_low_3
Description: NF6419
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6419_low_3 |
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Alignment Details
Target: chr2 (Bit Score: 165; Significance: 3e-88; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 165; E-Value: 3e-88
Query Start/End: Original strand, 136 - 328
Target Start/End: Original strand, 15427267 - 15427459
Alignment:
| Q |
136 |
ttgaacccaattataacaaggtcattttctttataacatacttttattcttcatcttaattatgcacannnnnnnngacacctcaacttatatgcatgtt |
235 |
Q |
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| T |
15427267 |
ttgaacccaattataacaaggtcattttctttataacatacttttattcttcatcttaattatgcacattttttttgacacctcaacttatatacatgtt |
15427366 |
T |
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| Q |
236 |
ttttgtgtggcaacttatgcacatgttgaatttttctcatttggttatgtattttcaatattcctttgcaggaaagcttatatgaaactgatg |
328 |
Q |
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| T |
15427367 |
ttttgtgtggcaacttatgcacatgttgaatttttctcatttggttatgtattttcaatattcctttgcaggaaagcttatatgaaactgatg |
15427459 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 10 - 70
Target Start/End: Original strand, 15427140 - 15427201
Alignment:
| Q |
10 |
catcatcaccaactacctctaaatccactgggact-aacttccaaccatggatcagatcttt |
70 |
Q |
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| T |
15427140 |
catcatcaccaactacctctaaatccactgggactaaacttccaaccatggatcagatcttt |
15427201 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 19 - 70
Target Start/End: Original strand, 15436570 - 15436622
Alignment:
| Q |
19 |
caactacctctaaatccactgggact-aacttccaaccatggatcagatcttt |
70 |
Q |
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| T |
15436570 |
caactacctctaaatcaactgggactaaacatccaaccatggggcagatcttt |
15436622 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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