View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6420_low_1 (Length: 393)
Name: NF6420_low_1
Description: NF6420
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6420_low_1 |
 | |
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Alignment Details
Target: chr7 (Bit Score: 285; Significance: 1e-160; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 285; E-Value: 1e-160
Query Start/End: Original strand, 10 - 386
Target Start/End: Complemental strand, 39984928 - 39984552
Alignment:
| Q |
10 |
catcatcaatgacaagggtagactttctaaggaagatattgagaagatggttcaagaggcagagaagtacaagtccgaggatgaagaacataagaagaag |
109 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||||||||| || |||||||| |||||||||||| |
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|
| T |
39984928 |
catcaccaatgacaagggtagactttcaaaggaagacattgagaagatggttcaagaggcagagaagtacaagtcggaagatgaagagcataagaagaag |
39984829 |
T |
|
| Q |
110 |
gtcgaggccaagaatgcattggaaaattatgcatacaacatgaggaacacaattaaggatgacaagattgcaggaaagcttgattccgatgacaagaaga |
209 |
Q |
| |
|
|||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||| || |||||||||||||||||||| |||||||| |||| |
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|
| T |
39984828 |
gtcgaggccaagaatgcattggaaaactatgcatacaacatgaggaacaccattaaggatgaaaaaattgcaggaaagcttgattcggatgacaaaaaga |
39984729 |
T |
|
| Q |
210 |
agattgaggacaccattgaggctgctatccagtggctagatgctaaccagcttgcagaggcagatgagtttgaggacaagatgaaggaattggaaagtgt |
309 |
Q |
| |
|
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||| | ||| |||| |
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|
| T |
39984728 |
agatcgaggacaccattgaggctgctatccagtggctagatgccaaccagcttgcagaggctgatgagtttgaggacaagatgaaggaacttgaaggtgt |
39984629 |
T |
|
| Q |
310 |
ctgcaaccctatcattgccaagatgtaccaaggtggtgcaggtcctgacatgggcgctgcagcagatgatgatgatg |
386 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| | | ||||||||||| |
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|
| T |
39984628 |
ctgcaaccctatcattgccaagatgtaccaaggtggtgcaggtcctgacatgggtgctgctcccggtgatgatgatg |
39984552 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 80; E-Value: 2e-37
Query Start/End: Original strand, 10 - 345
Target Start/End: Original strand, 8018299 - 8018634
Alignment:
| Q |
10 |
catcatcaatgacaagggtagactttctaaggaagatattgagaagatggttcaagaggcagagaagtacaagtccgaggatgaagaacataagaagaag |
109 |
Q |
| |
|
||||| ||||||||| ||||| | ||||||||||| ||||||||||||||| | || ||||| || |||||| | || || || ||||| || |||||| |
|
|
| T |
8018299 |
catcaccaatgacaaaggtaggttgtctaaggaagaaattgagaagatggttgaggaagcagaaaaatacaaggctgaagacgaggaacacaaaaagaag |
8018398 |
T |
|
| Q |
110 |
gtcgaggccaagaatgcattggaaaattatgcatacaacatgaggaacacaattaaggatgacaagattgcaggaaagcttgattccgatgacaagaaga |
209 |
Q |
| |
|
|| || || |||||||| |||||||| || || ||||||||||||||||||||||| || || ||||||| ||||||| | || ||||| |||| |
|
|
| T |
8018399 |
gttgatgcaaagaatgctttggaaaactacgcttacaacatgaggaacacaattaaagacgagaagattggttcaaagctttcacctgaggacaaaaaga |
8018498 |
T |
|
| Q |
210 |
agattgaggacaccattgaggctgctatccagtggctagatgctaaccagcttgcagaggcagatgagtttgaggacaagatgaaggaattggaaagtgt |
309 |
Q |
| |
|
||||||| || | ||||| ||||| || |||||| | || ||||||| | |||||||| ||||||||||| || |||||||||||| | || || | |
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|
| T |
8018499 |
agattgatgatgcaattgacgctgcaattcagtggttggacagtaaccagttggcagaggctgatgagtttgaagataagatgaaggaacttgagagcct |
8018598 |
T |
|
| Q |
310 |
ctgcaaccctatcattgccaagatgtaccaaggtgg |
345 |
Q |
| |
|
|||||||| ||||||||||||||||| |||||||| |
|
|
| T |
8018599 |
ttgcaacccaatcattgccaagatgtatcaaggtgg |
8018634 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 56; E-Value: 4e-23
Query Start/End: Original strand, 38 - 345
Target Start/End: Complemental strand, 8101921 - 8101614
Alignment:
| Q |
38 |
aaggaagatattgagaagatggttcaagaggcagagaagtacaagtccgaggatgaagaacataagaagaaggtcgaggccaagaatgcattggaaaatt |
137 |
Q |
| |
|
|||||||| || ||||||||||| ||||| |||||||| |||||| || ||||| || || ||||||||||| ||||| ||||| | ||||| || | |
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|
| T |
8101921 |
aaggaagaaatcgagaagatggtccaagaagcagagaaatacaagagtgaagatgaggagcacaagaagaaggttgaggcaaagaactccttggagaact |
8101822 |
T |
|
| Q |
138 |
atgcatacaacatgaggaacacaattaaggatgacaagattgcaggaaagcttgattccgatgacaagaagaagattgaggacaccattgaggctgctat |
237 |
Q |
| |
|
|||||||||||||||| ||||| ||||| || || ||||| ||||||| | ||||||||| |||||||||| | ||||||| || || |
|
|
| T |
8101821 |
atgcatacaacatgagaaacaccattaaagacgagaagatcagttcaaagctttcaggaggagacaagaagcagattgaggatgcaattgagggagccat |
8101722 |
T |
|
| Q |
238 |
ccagtggctagatgctaaccagcttgcagaggcagatgagtttgaggacaagatgaaggaattggaaagtgtctgcaaccctatcattgccaagatgtac |
337 |
Q |
| |
|
|| ||||| ||||| ||||||||||| || || ||||||||||| |||||||||||||| | || | |||| ||||| |||||||| ||||||||| |
|
|
| T |
8101721 |
tcaatggcttgatgcaaaccagcttgctgaagccgatgagtttgaagacaagatgaaggagcttgagacaatctgtaacccaatcattgcaaagatgtac |
8101622 |
T |
|
| Q |
338 |
caaggtgg |
345 |
Q |
| |
|
|||||||| |
|
|
| T |
8101621 |
caaggtgg |
8101614 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 176; Significance: 1e-94; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 176; E-Value: 1e-94
Query Start/End: Original strand, 10 - 386
Target Start/End: Original strand, 17649203 - 17649568
Alignment:
| Q |
10 |
catcatcaatgacaagggtagactttctaaggaagatattgagaagatggttcaagaggcagagaagtacaagtccgaggatgaagaacataagaagaag |
109 |
Q |
| |
|
||||| ||||||||||||||||||||| |||||| | |||||||||||||||| ||||||||||||||||||||| || |||||||| |||||| || |
|
|
| T |
17649203 |
catcaccaatgacaagggtagactttcaaaggaaaacattgagaagatggttcgagaggcagagaagtacaagtcggaagatgaagagcataagtag--- |
17649299 |
T |
|
| Q |
110 |
gtcgaggccaagaatgcattggaaaattatgcatacaacatgaggaacacaattaaggatgacaagattgcaggaaagcttgattccgatgacaagaaga |
209 |
Q |
| |
|
|| ||| |||||||||||||||||| ||| |||||||||||||||| ||||| ||||| ||||||||| |||||||||||||| | |||||||||| |
|
|
| T |
17649300 |
gttaaggacaagaatgcattggaaaactat----acaacatgaggaacaccattaatgatgaaaagattgcatgaaagcttgattccaaagacaagaaga |
17649395 |
T |
|
| Q |
210 |
agattgaggacaccattgaggctgctatccagtggctagatgctaaccagcttgcagaggcagatgagtttgaggacaagatgaaggaattggaaagtgt |
309 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| | |||||||||| | ||||||||||||||||||| |||||||||||| | | |||| |
|
|
| T |
17649396 |
---ttgaggacaccattgaggctgctatccagtggctagaccc-aaccagcttgaataggcagatgagtttgaggataagatgaaggaaccgcgaggtgt |
17649491 |
T |
|
| Q |
310 |
ctgcaaccctatcattgccaagatgtaccaaggtggtgcaggtcctgacatgggcgctgcagcagatgatgatgatg |
386 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||| |||||||| || || ||| ||||||||||| |
|
|
| T |
17649492 |
cggcaaccctatcattgccaagatgtaccaaggtggtgcaggtcttgacatggatgccgctccaggtgatgatgatg |
17649568 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 156; E-Value: 9e-83
Query Start/End: Original strand, 10 - 362
Target Start/End: Original strand, 17706569 - 17706911
Alignment:
| Q |
10 |
catcatcaatgacaagggtagactttctaaggaagatattgagaagatggttcaagaggcagagaagtacaagtccgaggatgaagaacataagaagaag |
109 |
Q |
| |
|
||||| |||||||||||| |||||||| ||||||| ||||||||||| |||| |||||| ||||||||||| || || | | |||| ||| ||| || |
|
|
| T |
17706569 |
catcaccaatgacaagggaagactttcaaaggaagtcattgagaagatagttcgagaggcggagaagtacaactcagaagtttaagagcat---aaggag |
17706665 |
T |
|
| Q |
110 |
gtcgaggccaagaatgcattggaaaattatgcatacaacatgaggaacacaattaaggatgacaagattgcaggaaagcttgattccgatgacaagaaga |
209 |
Q |
| |
|
|| |||||||||||||| ||||||| | |||||||| |||| |||| ||||||||||| |||||||||||||||||||||||| | ||| |||| |
|
|
| T |
17706666 |
gttgaggccaagaatgctatggaaaact----atacaacacgagggacaccattaaggatgaaaagattgcaggaaagcttgattccaaagac---aaga |
17706758 |
T |
|
| Q |
210 |
agattgaggacaccattgaggctgctatccagtggctagatgctaaccagcttgcagaggcagatgagtttgaggacaagatgaaggaattggaaagtgt |
309 |
Q |
| |
|
| ||||||||||||||||||||| |||||| ||||||||| || || |||||||||||||||||||||||||||||||||||||||||| ||| |||| |
|
|
| T |
17706759 |
aaattgaggacaccattgaggctactatccggtggctagacgccaatcagcttgcagaggcagatgagtttgaggacaagatgaaggaaccagaaggtgt |
17706858 |
T |
|
| Q |
310 |
ctgcaaccctatcattgccaagatgtaccaaggtggtgcaggtcctgacatgg |
362 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||| |||| || ||||| |
|
|
| T |
17706859 |
ctgcaaccctatcattgccaagatgtaccaaggtggtgctggtcttggcatgg |
17706911 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 131
Target Start/End: Original strand, 17722080 - 17722122
Alignment:
| Q |
89 |
gatgaagaacataagaagaaggtcgaggccaagaatgcattgg |
131 |
Q |
| |
|
|||||||| ||||||||| |||| ||||||||||||||||||| |
|
|
| T |
17722080 |
gatgaagagcataagaaggaggttgaggccaagaatgcattgg |
17722122 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 74; Significance: 8e-34; HSPs: 3)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 11 - 344
Target Start/End: Original strand, 23588620 - 23588953
Alignment:
| Q |
11 |
atcatcaatgacaagggtagactttctaaggaagatattgagaagatggttcaagaggcagagaagtacaagtccgaggatgaagaacataagaagaagg |
110 |
Q |
| |
|
|||| ||||||||||||||| || || |||||||| |||||||||||||| || || || || ||||||||||| ||||| || || || || ||||| | |
|
|
| T |
23588620 |
atcaccaatgacaagggtaggctctccaaggaagaaattgagaagatggtgcaggaagctgaaaagtacaagtctgaggacgaggagcacaaaaagaaag |
23588719 |
T |
|
| Q |
111 |
tcgaggccaagaatgcattggaaaattatgcatacaacatgaggaacacaattaaggatgacaagattgcaggaaagcttgattccgatgacaagaagaa |
210 |
Q |
| |
|
| ||||||||||||||| | || || ||||| |||||||||||||||||||| || || ||||||||||| ||| | | | ||||| |||||||| |
|
|
| T |
23588720 |
tggaggccaagaatgcacttgagaactatgcctacaacatgaggaacacaatcaaagacgacaagattgcttcgaagttgtctgctgatgataagaagaa |
23588819 |
T |
|
| Q |
211 |
gattgaggacaccattgaggctgctatccagtggctagatgctaaccagcttgcagaggcagatgagtttgaggacaagatgaaggaattggaaagtgtc |
310 |
Q |
| |
|
||||| || | ||||||| ||||| || ||| | |||| || || |||| |||||| ||||| |||||||||||||||||||| |||| | | |
|
|
| T |
23588820 |
aattgaagatgctattgagggggctattcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggcatt |
23588919 |
T |
|
| Q |
311 |
tgcaaccctatcattgccaagatgtaccaaggtg |
344 |
Q |
| |
|
||||||||||||||||| | |||||| ||||||| |
|
|
| T |
23588920 |
tgcaaccctatcattgcaaggatgtatcaaggtg |
23588953 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 61; E-Value: 4e-26
Query Start/End: Original strand, 16 - 344
Target Start/End: Original strand, 23597477 - 23597805
Alignment:
| Q |
16 |
caatgacaagggtagactttctaaggaagatattgagaagatggttcaagaggcagagaagtacaagtccgaggatgaagaacataagaagaaggtcgag |
115 |
Q |
| |
|
||||||||||||||| || || ||||| || |||||||| ||||| || || || || |||||||| ||||||||||| || || || | |||||| ||| |
|
|
| T |
23597477 |
caatgacaagggtaggctctccaaggaggacattgagaaaatggtgcaggaagcggaaaagtacaaatccgaggatgaggagcacaaaaggaaggtggag |
23597576 |
T |
|
| Q |
116 |
gccaagaatgcattggaaaattatgcatacaacatgaggaacacaattaaggatgacaagattgcaggaaagcttgattccgatgacaagaagaagattg |
215 |
Q |
| |
|
||||| ||||| | || || ||||| |||||||||||||||||||| || || ||||||||||| ||| | | ||||| |||||||| |||| |
|
|
| T |
23597577 |
gccaaaaatgcgcttgagaactatgcctacaacatgaggaacacaatcaaagacgacaagattgcttcgaagttgtcggctgatgataagaagaaaattg |
23597676 |
T |
|
| Q |
216 |
aggacaccattgaggctgctatccagtggctagatgctaaccagcttgcagaggcagatgagtttgaggacaagatgaaggaattggaaagtgtctgcaa |
315 |
Q |
| |
|
| || | ||||||| ||||| || ||| | |||| || || |||| |||||| ||||| |||||||||||||||||||| |||| || | ||||| |
|
|
| T |
23597677 |
aagatgctattgagggggctattcaatggttggatggaaatcaacttggagaggctgatgaatttgaggacaagatgaaggagctggagggtatttgcaa |
23597776 |
T |
|
| Q |
316 |
ccctatcattgccaagatgtaccaaggtg |
344 |
Q |
| |
|
|||||||||||| | |||||| ||||||| |
|
|
| T |
23597777 |
ccctatcattgcaaggatgtatcaaggtg |
23597805 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 38 - 179
Target Start/End: Complemental strand, 54395677 - 54395536
Alignment:
| Q |
38 |
aaggaagatattgagaagatggttcaagaggcagagaagtacaagtccgaggatgaagaacataagaagaaggtcgaggccaagaatgcattggaaaatt |
137 |
Q |
| |
|
|||||||| || ||||||||||| |||| ||||||||||| ||| | ||||||||||| |||||||| || ||||| |||||| || | || |||| |
|
|
| T |
54395677 |
aaggaagagatagagaagatggtgaaagatgcagagaagtataaggcagaggatgaagaggtgaagaagaaagtggaggcgaagaattcaattgagaatt |
54395578 |
T |
|
| Q |
138 |
atgcatacaacatgaggaacacaattaaggatgacaagattg |
179 |
Q |
| |
|
|||| || || |||||||| |||||||||||||| ||||||| |
|
|
| T |
54395577 |
atgcttataatatgaggaatacaattaaggatgagaagattg |
54395536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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