View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6421_low_1 (Length: 503)

Name: NF6421_low_1
Description: NF6421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6421_low_1
NF6421_low_1
[»] chr5 (9 HSPs)
chr5 (1-221)||(19424168-19424388)
chr5 (1-221)||(20089024-20089244)
chr5 (1-221)||(30822486-30822706)
chr5 (290-503)||(19423886-19424099)
chr5 (290-503)||(20088741-20088954)
chr5 (290-503)||(30822776-30822989)
chr5 (1-221)||(19682931-19683151)
chr5 (1-211)||(30664891-30665101)
chr5 (350-436)||(19682794-19682880)
[»] chr8 (4 HSPs)
chr8 (1-221)||(42612051-42612271)
chr8 (290-503)||(42611768-42611981)
chr8 (1-221)||(8593279-8593499)
chr8 (350-436)||(8593142-8593228)
[»] chr1 (4 HSPs)
chr1 (1-221)||(6408541-6408761)
chr1 (290-503)||(6408831-6409044)
chr1 (1-48)||(5566106-5566153)
chr1 (1-76)||(5566358-5566434)
[»] chr2 (13 HSPs)
chr2 (1-221)||(11749267-11749487)
chr2 (1-221)||(37015745-37015965)
chr2 (1-221)||(43802851-43803071)
chr2 (290-488)||(37016035-37016233)
chr2 (290-503)||(11748984-11749197)
chr2 (1-221)||(36629556-36629776)
chr2 (1-221)||(44336648-44336868)
chr2 (350-436)||(36629419-36629505)
chr2 (324-460)||(6002422-6002559)
chr2 (1-60)||(34507169-34507228)
chr2 (350-436)||(44336511-44336597)
chr2 (1-90)||(6002095-6002184)
chr2 (161-221)||(6002195-6002255)
[»] chr6 (6 HSPs)
chr6 (1-221)||(26336449-26336669)
chr6 (1-221)||(22026540-22026760)
chr6 (1-221)||(13051381-13051596)
chr6 (331-460)||(26336243-26336372)
chr6 (324-460)||(13051048-13051184)
chr6 (350-436)||(22026403-22026489)
[»] chr4 (8 HSPs)
chr4 (1-221)||(5055481-5055701)
chr4 (5-221)||(10227005-10227221)
chr4 (1-221)||(20170341-20170561)
chr4 (331-460)||(19136872-19137001)
chr4 (89-221)||(19136663-19136795)
chr4 (331-460)||(10227298-10227427)
chr4 (350-436)||(20170612-20170698)
chr4 (332-428)||(5055734-5055830)
[»] chr3 (3 HSPs)
chr3 (1-189)||(13112678-13112866)
chr3 (1-221)||(26525441-26525661)
chr3 (350-436)||(26525304-26525390)
[»] scaffold0504 (2 HSPs)
scaffold0504 (1-216)||(4066-4281)
scaffold0504 (324-460)||(3720-3856)
[»] chr7 (2 HSPs)
chr7 (1-91)||(37170924-37171014)
chr7 (1-102)||(9214079-9214180)


Alignment Details
Target: chr5 (Bit Score: 221; Significance: 1e-121; HSPs: 9)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-121
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 19424388 - 19424168
Alignment:
Q  1 ttccaacgtgattgtgcattcacccgttcgaaaatgaaaagtatgtgtttcagaccgccacctttctacaagagcggttacgatgtgtctatcgattttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19424388 ttccaacgtgattgtgcattcacccgttcgaaaatgaaaagtatgtgtttcagaccgccacctttctacaagagcggttacgatgtgtctatcgattttg 19424289  T
Q  101 taacgccctatttgagaaacctcaaaaaatccggtttgacgtagatactcttcaatatgaggacttggtattatgtgttgtcttgtacgggtgacgagag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  19424288 taacgccctatttgagaaacctcaaaaaatccggtttgacgtagatactcttcaatatgaggacttggtattatgtgttgtcttgtacgggtgacgagag 19424189  T
Q  201 gtgcaccctctgcatcctaac 221  Q
    |||||||||||||||||||||    
T  19424188 gtgcaccctctgcatcctaac 19424168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 20089244 - 20089024
Alignment:
Q  1 ttccaacgtgattgtgcattcacccgttcgaaaatgaaaagtatgtgtttcagaccgccacctttctacaagagcggttacgatgtgtctatcgattttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  20089244 ttccaacgtgattgtgcattcacccgttcgaaaatgaaaagtatgtgtttcagaccgccacctttctacaagagcggttacgatgtgtctatcgattttg 20089145  T
Q  101 taacgccctatttgagaaacctcaaaaaatccggtttgacgtagatactcttcaatatgaggacttggtattatgtgttgtcttgtacgggtgacgagag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  20089144 taacgccctatttgagaaacctcaaaaaatccggtttgacgtagatactcttcaatatgaggacttggtattatgtgttgtctagtacgggtgacgagag 20089045  T
Q  201 gtgcaccctctgcatcctaac 221  Q
    ||||||||| |||||||||||    
T  20089044 gtgcaccctgtgcatcctaac 20089024  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 30822486 - 30822706
Alignment:
Q  1 ttccaacgtgattgtgcattcacccgttcgaaaatgaaaagtatgtgtttcagaccgccacctttctacaagagcggttacgatgtgtctatcgattttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  30822486 ttccaacgtgattgtgcattcacccgttcgaaaatgaaaagtatgtgtttcagaccgccacctttctacaagagcggttacgatgtgtctatcgattttg 30822585  T
Q  101 taacgccctatttgagaaacctcaaaaaatccggtttgacgtagatactcttcaatatgaggacttggtattatgtgttgtcttgtacgggtgacgagag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  30822586 taacgccctatttgagaaacctcaaaaaatccggtttgacgtagatactcttcaatatgaggacttggtattatgtgttgtctagtacgggtgacgagag 30822685  T
Q  201 gtgcaccctctgcatcctaac 221  Q
    ||||||||| |||||||||||    
T  30822686 gtgcaccctgtgcatcctaac 30822706  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 290 - 503
Target Start/End: Complemental strand, 19424099 - 19423886
Alignment:
Q  290 gaaattaatattgaactataatattaagagtagtattaataattaaaaaatgaaaacgacattaacaaattaatctttatatatacccatcttctgatat 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  19424099 gaaattaatattgaactataatattaagagtagtattaataattaaaaaatgaaaacgacattaacaaattaatatttatatatacccatcttctgatat 19424000  T
Q  390 gttcttaattggatctatgatcattttcaaaccacaagtatgccattactttatataatttgtttgaaatattggttgtatgggggtgaggaaggaaagc 489  Q
    |||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||     
T  19423999 gttcttcattggatctgtgatcattttccaaccacaagtatgccattactttatataatttgtttgaaatattggttgtatgtgagtgagtaaggaaagg 19423900  T
Q  490 aatgttattgagta 503  Q
    ||||| | ||||||    
T  19423899 aatgtgagtgagta 19423886  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 290 - 503
Target Start/End: Complemental strand, 20088954 - 20088741
Alignment:
Q  290 gaaattaatattgaactataatattaagagtagtattaataattaaaaaatgaaaacgacattaacaaattaatctttatatatacccatcttctgatat 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  20088954 gaaattaatattgaactataatattaagagtagtattaataattaaaaaatgaaaacgacattaacaaattaatatttatatatacccatcttctgatat 20088855  T
Q  390 gttcttaattggatctatgatcattttcaaaccacaagtatgccattactttatataatttgtttgaaatattggttgtatgggggtgaggaaggaaagc 489  Q
    |||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||     
T  20088854 gttcttcattggatctgtgatcattttccaaccacaagtatgccattactttatataatttgtttgaaatattggttgtatgtgagtgagtaaggaaagg 20088755  T
Q  490 aatgttattgagta 503  Q
    ||||| | ||||||    
T  20088754 aatgtgagtgagta 20088741  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 166; E-Value: 1e-88
Query Start/End: Original strand, 290 - 503
Target Start/End: Original strand, 30822776 - 30822989
Alignment:
Q  290 gaaattaatattgaactataatattaagagtagtattaataattaaaaaatgaaaacgacattaacaaattaatctttatatatacccatcttctgatat 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||  |||||||||||||||||||||||| |||||||||||||||||||||||||    
T  30822776 gaaattaatattgaactataatattaagagtagtattaataattaaaatgtgaaaacgacattaacaaattaatatttatatatacccatcttctgatat 30822875  T
Q  390 gttcttaattggatctatgatcattttcaaaccacaagtatgccattactttatataatttgtttgaaatattggttgtatgggggtgaggaaggaaagc 489  Q
    |||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||     
T  30822876 gttcttcattggatctgtgatcattttccaaccacaagtatgccattactttatataatttgtttgaaatattggttgtatgtgagtgagtaaggaaagg 30822975  T
Q  490 aatgttattgagta 503  Q
    ||||| | ||||||    
T  30822976 aatgtgagtgagta 30822989  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 19683151 - 19682931
Alignment:
Q  1 ttccaacgtgattgtgcattcacccgttcgaaaatgaaaagtatgtgtttcagaccgccacctttctacaagagcggttacgatgtgtctatcgattttg 100  Q
    |||||| ||||| || || |||||| ||||||| ||||||||||| ||||| |||||||| ||||||||||||| |||||| ||||| ||||| ||||||    
T  19683151 ttccaaagtgatagtacactcaccctttcgaaagtgaaaagtatgggtttcggaccgccatctttctacaagagtggttacaatgtgcctatcaattttg 19683052  T
Q  101 taacgccctatttgagaaacctcaaaaaatccggtttgacgtagatactcttcaatatgaggacttggtattatgtgttgtcttgtacgggtgacgagag 200  Q
    |||||||||||||||||||||||||||||||| | |||||||||||| |||| ||||  ||||||||||| ||||||||||| |||||| ||||| ||||    
T  19683051 taacgccctatttgagaaacctcaaaaaatccagcttgacgtagataatcttgaataaaaggacttggtactatgtgttgtcgtgtacgagtgacaagag 19682952  T
Q  201 gtgcaccctctgcatcctaac 221  Q
    || ||||||||||||||||||    
T  19682951 gtacaccctctgcatcctaac 19682931  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 1 - 211
Target Start/End: Complemental strand, 30665101 - 30664891
Alignment:
Q  1 ttccaacgtgattgtgcattcacccgttcgaaaatgaaaagtatgtgtttcagaccgccacctttctacaagagcggttacgatgtgtctatcgattttg 100  Q
    ||||| ||||||||| |||||||| ||||||||||||||||||||||| || || ||||| ||||||||||||||||||||||| ||||| || |||||     
T  30665101 ttccagcgtgattgtacattcacctgttcgaaaatgaaaagtatgtgtctcggatcgccatctttctacaagagcggttacgatatgtctgtcaatttta 30665002  T
Q  101 taacgccctatttgagaaacctcaaaaaatccggtttgacgtagatactcttcaatatgaggacttggtattatgtgttgtcttgtacgggtgacgagag 200  Q
    ||| |||||||||| | ||||||| ||||||| | |||||||||||| || ||||||   |||||||||  ||||||||||| |||||| |||   || |    
T  30665001 taatgccctatttgcgtaacctcataaaatccagcttgacgtagataatcctcaataaatggacttggttgtatgtgttgtcgtgtacgagtgcttagtg 30664902  T
Q  201 gtgcaccctct 211  Q
    |||||||||||    
T  30664901 gtgcaccctct 30664891  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 350 - 436
Target Start/End: Complemental strand, 19682880 - 19682794
Alignment:
Q  350 attaacaaattaatctttatatatacccatcttctgatatgttcttaattggatctatgatcattttcaaaccacaagtatgccatt 436  Q
    |||||||||||||| || |||||||||||||||||||| |||||||   ||||||||||||||||||| ||||||||||||||||||    
T  19682880 attaacaaattaatattcatatatacccatcttctgatgtgttcttccgtggatctatgatcattttccaaccacaagtatgccatt 19682794  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 42612271 - 42612051
Alignment:
Q  1 ttccaacgtgattgtgcattcacccgttcgaaaatgaaaagtatgtgtttcagaccgccacctttctacaagagcggttacgatgtgtctatcgattttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  42612271 ttccaacgtgattgtgcattcacccgttcgaaaatgaaaagtatgtgtttcagaccgccacctttctacaagagcggttacgatgtgtctatcgattttg 42612172  T
Q  101 taacgccctatttgagaaacctcaaaaaatccggtttgacgtagatactcttcaatatgaggacttggtattatgtgttgtcttgtacgggtgacgagag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  42612171 taacgccctatttgagaaacctcaaaaaatccggtttgacgtagatactcttcaatatgaggacttggtattatgtgttgtctagtacgggtgacgagag 42612072  T
Q  201 gtgcaccctctgcatcctaac 221  Q
    |||||||||||||||||||||    
T  42612071 gtgcaccctctgcatcctaac 42612051  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 290 - 503
Target Start/End: Complemental strand, 42611981 - 42611768
Alignment:
Q  290 gaaattaatattgaactataatattaagagtagtattaataattaaaaaatgaaaacgacattaacaaattaatctttatatatacccatcttctgatat 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  42611981 gaaattaatattgaactataatattaagagtagtattaataattaaaaaatgaaaacgacattaacaaattaatatttatatatacccatcttctgatat 42611882  T
Q  390 gttcttaattggatctatgatcattttcaaaccacaagtatgccattactttatataatttgtttgaaatattggttgtatgggggtgaggaaggaaagc 489  Q
    |||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||     
T  42611881 gttcttcattggatctgtgatcattttccaaccacaagtatgccattactttatataatttgtttgaaatattggttgtatgtgagtgagtaaggaaagg 42611782  T
Q  490 aatgttattgagta 503  Q
    ||||| | ||||||    
T  42611781 aatgtgagtgagta 42611768  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 109; E-Value: 1e-54
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 8593499 - 8593279
Alignment:
Q  1 ttccaacgtgattgtgcattcacccgttcgaaaatgaaaagtatgtgtttcagaccgccacctttctacaagagcggttacgatgtgtctatcgattttg 100  Q
    |||||| ||||| || || |||||| ||||||| ||||||||||| ||||| |||||||| ||||||||||||| |||||| ||||| ||||| ||||||    
T  8593499 ttccaaagtgatagtacactcaccctttcgaaagtgaaaagtatgggtttcggaccgccatctttctacaagagtggttacaatgtgcctatcaattttg 8593400  T
Q  101 taacgccctatttgagaaacctcaaaaaatccggtttgacgtagatactcttcaatatgaggacttggtattatgtgttgtcttgtacgggtgacgagag 200  Q
    |||| ||||||||||||||||||||||||||  |  ||||||||||| |||| ||||   |||||||||| ||||||||||| |||||| ||||| ||||    
T  8593399 taactccctatttgagaaacctcaaaaaatctagcctgacgtagataatcttgaataaacggacttggtactatgtgttgtcgtgtacgagtgacaagag 8593300  T
Q  201 gtgcaccctctgcatcctaac 221  Q
    || ||||||||||||||||||    
T  8593299 gtacaccctctgcatcctaac 8593279  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 350 - 436
Target Start/End: Complemental strand, 8593228 - 8593142
Alignment:
Q  350 attaacaaattaatctttatatatacccatcttctgatatgttcttaattggatctatgatcattttcaaaccacaagtatgccatt 436  Q
    |||||||||||||| || |||||||||||| ||||||| |||||||   | ||||||||||||||||| ||| ||||||||||||||    
T  8593228 attaacaaattaatattcatatatacccattttctgatgtgttcttcggtagatctatgatcattttccaacgacaagtatgccatt 8593142  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 217; Significance: 1e-119; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 6408541 - 6408761
Alignment:
Q  1 ttccaacgtgattgtgcattcacccgttcgaaaatgaaaagtatgtgtttcagaccgccacctttctacaagagcggttacgatgtgtctatcgattttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6408541 ttccaacgtgattgtgcattcacccgttcgaaaatgaaaagtatgtgtttcagaccgccacctttctacaagagcggttacgatgtgtctatcgattttg 6408640  T
Q  101 taacgccctatttgagaaacctcaaaaaatccggtttgacgtagatactcttcaatatgaggacttggtattatgtgttgtcttgtacgggtgacgagag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  6408641 taacgccctatttgagaaacctcaaaaaatccggtttgacgtagatactcttcaatatgaggacttggtattatgtgttgtctagtacgggtgacgagag 6408740  T
Q  201 gtgcaccctctgcatcctaac 221  Q
    |||||||||||||||||||||    
T  6408741 gtgcaccctctgcatcctaac 6408761  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 174; E-Value: 2e-93
Query Start/End: Original strand, 290 - 503
Target Start/End: Original strand, 6408831 - 6409044
Alignment:
Q  290 gaaattaatattgaactataatattaagagtagtattaataattaaaaaatgaaaacgacattaacaaattaatctttatatatacccatcttctgatat 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  6408831 gaaattaatattgaactataatattaagagtagtattaataattaaaaaatgaaaacgacattaacaaattaatatttatatatacccatcttctgatat 6408930  T
Q  390 gttcttaattggatctatgatcattttcaaaccacaagtatgccattactttatataatttgtttgaaatattggttgtatgggggtgaggaaggaaagc 489  Q
    |||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||     
T  6408931 gttcttcattggatctgtgatcattttccaaccacaagtatgccattactttatataatttgtttgaaatattggttgtatgtgagtgagtaaggaaagg 6409030  T
Q  490 aatgttattgagta 503  Q
    ||||| | ||||||    
T  6409031 aatgtgagtgagta 6409044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 1 - 48
Target Start/End: Original strand, 5566106 - 5566153
Alignment:
Q  1 ttccaacgtgattgtgcattcacccgttcgaaaatgaaaagtatgtgt 48  Q
    |||||||||||||||||||||||| ||| |||||||||||||||||||    
T  5566106 ttccaacgtgattgtgcattcacctgttggaaaatgaaaagtatgtgt 5566153  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 1 - 76
Target Start/End: Complemental strand, 5566434 - 5566358
Alignment:
Q  1 ttccaacgtgattgtgcattcacccgttcgaaaa-tgaaaagtatgtgtttcagaccgccacctttctacaagagcg 76  Q
    |||||||||||| ||||||||||| ||| ||||| ||||||||||| || ||| ||| ||||||||  |||||||||    
T  5566434 ttccaacgtgatggtgcattcacctgttggaaaaatgaaaagtatgcgtctcaaacctccaccttttgacaagagcg 5566358  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 213; Significance: 1e-116; HSPs: 13)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 11749487 - 11749267
Alignment:
Q  1 ttccaacgtgattgtgcattcacccgttcgaaaatgaaaagtatgtgtttcagaccgccacctttctacaagagcggttacgatgtgtctatcgattttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  11749487 ttccaacgtgattgtgcattcacccgttcgaaaatgaaaagtatgtgtttcagaccgccacctttctacaagagcggttacgatgtgtctatcgattttg 11749388  T
Q  101 taacgccctatttgagaaacctcaaaaaatccggtttgacgtagatactcttcaatatgaggacttggtattatgtgttgtcttgtacgggtgacgagag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  11749387 taacgccctatttgagaaacctcaaaaaatccggtttgacgtagatactcttcaatatgaggacttggtattatgtgttgtctagtacgggtgacgagag 11749288  T
Q  201 gtgcaccctctgcatcctaac 221  Q
    ||||||||| |||||||||||    
T  11749287 gtgcaccctgtgcatcctaac 11749267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 37015745 - 37015965
Alignment:
Q  1 ttccaacgtgattgtgcattcacccgttcgaaaatgaaaagtatgtgtttcagaccgccacctttctacaagagcggttacgatgtgtctatcgattttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37015745 ttccaacgtgattgtgcattcacccgttcgaaaatgaaaagtatgtgtttcagaccgccacctttctacaagagcggttacgatgtgtctatcgattttg 37015844  T
Q  101 taacgccctatttgagaaacctcaaaaaatccggtttgacgtagatactcttcaatatgaggacttggtattatgtgttgtcttgtacgggtgacgagag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  37015845 taacgccctatttgagaaacctcaaaaaatccggtttgacgtagatactcttcaatatgaggacttggtattatgtgttgtctagtacgggtgacgagag 37015944  T
Q  201 gtgcaccctctgcatcctaac 221  Q
    ||||||||| |||||||||||    
T  37015945 gtgcaccctgtgcatcctaac 37015965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 213; E-Value: 1e-116
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 43802851 - 43803071
Alignment:
Q  1 ttccaacgtgattgtgcattcacccgttcgaaaatgaaaagtatgtgtttcagaccgccacctttctacaagagcggttacgatgtgtctatcgattttg 100  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  43802851 ttccaacgtgattgtgcattcacccgttcgaaaatgaaaagtatgtgtttcagaccgccacctttctacaagagcggttacgatgtgtctatcgattttg 43802950  T
Q  101 taacgccctatttgagaaacctcaaaaaatccggtttgacgtagatactcttcaatatgaggacttggtattatgtgttgtcttgtacgggtgacgagag 200  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||    
T  43802951 taacgccctatttgagaaacctcaaaaaatccggtttgacgtagatactcttcaatatgaggacttggtattatgtgttgtctagtacgggtgacgagag 43803050  T
Q  201 gtgcaccctctgcatcctaac 221  Q
    ||||||||| |||||||||||    
T  43803051 gtgcaccctgtgcatcctaac 43803071  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 171; E-Value: 1e-91
Query Start/End: Original strand, 290 - 488
Target Start/End: Original strand, 37016035 - 37016233
Alignment:
Q  290 gaaattaatattgaactataatattaagagtagtattaataattaaaaaatgaaaacgacattaacaaattaatctttatatatacccatcttctgatat 389  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||    
T  37016035 gaaattaatattgaactataatattaagagtagtattaataattaaaaaatgaaaacgacattaacaaattaatatttatatatacccatcttctgatat 37016134  T
Q  390 gttcttaattggatctatgatcattttcaaaccacaagtatgccattactttatataatttgtttgaaatattggttgtatgggggtgaggaaggaaag 488  Q
    |||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||    
T  37016135 gttcttcattggatctgtgatcattttccaaccacaagtatgccattactttatataatttgtttgaaatattggttgtatgtgagtgagtaaggaaag 37016233  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 170; E-Value: 5e-91
Query Start/End: Original strand, 290 - 503
Target Start/End: Complemental strand, 11749197 - 11748984
Alignment:
Q  290 gaaattaatattgaactataatattaagagtagtattaataattaaaaaatgaaaacgacattaacaaattaatctttatatatacccatcttctgatat 389  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |||||||||||||||||||||||||    
T  11749197 gaaattaatattgaactataatattaagagtagtattaataattaaaaaatgaaaacgacattaacagattaatatttatatatacccatcttctgatat 11749098  T
Q  390 gttcttaattggatctatgatcattttcaaaccacaagtatgccattactttatataatttgtttgaaatattggttgtatgggggtgaggaaggaaagc 489  Q
    |||||| ||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||| ||||||||     
T  11749097 gttcttcattggatctgtgatcattttccaaccacaagtatgccattactttatataatttgtttgaaatattggttgtatgtgagtgagtaaggaaagg 11748998  T
Q  490 aatgttattgagta 503  Q
    ||||| | ||||||    
T  11748997 aatgtgagtgagta 11748984  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 36629776 - 36629556
Alignment:
Q  1 ttccaacgtgattgtgcattcacccgttcgaaaatgaaaagtatgtgtttcagaccgccacctttctacaagagcggttacgatgtgtctatcgattttg 100  Q
    |||||| ||||| || || |||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||| |||||| ||||| ||||| ||||||    
T  36629776 ttccaaagtgatagtacactcacccgttcgaaagtgaaaagtatgagtttcggaccgccatctttctacaagagtggttacaatgtgcctatcaattttg 36629677  T
Q  101 taacgccctatttgagaaacctcaaaaaatccggtttgacgtagatactcttcaatatgaggacttggtattatgtgttgtcttgtacgggtgacgagag 200  Q
    |||||| ||||||||||||||||||||||||| | |||||||||||| |||| ||||  ||||||||||| ||||||||||| |||||| ||||| ||||    
T  36629676 taacgctctatttgagaaacctcaaaaaatccagcttgacgtagataatcttgaataaaaggacttggtactatgtgttgtcgtgtacgagtgacaagag 36629577  T
Q  201 gtgcaccctctgcatcctaac 221  Q
    || ||||||||||||||||||    
T  36629576 gtacaccctctgcatcctaac 36629556  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 44336868 - 44336648
Alignment:
Q  1 ttccaacgtgattgtgcattcacccgttcgaaaatgaaaagtatgtgtttcagaccgccacctttctacaagagcggttacgatgtgtctatcgattttg 100  Q
    |||||| ||||| || || |||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||| |||||| ||||| ||||| ||||||    
T  44336868 ttccaaagtgatagtacactcacccgttcgaaagtgaaaagtatgggtttcggaccgccatctttctacaagagtggttacaatgtgcctatcaattttg 44336769  T
Q  101 taacgccctatttgagaaacctcaaaaaatccggtttgacgtagatactcttcaatatgaggacttggtattatgtgttgtcttgtacgggtgacgagag 200  Q
    |||||||||||||||||||||||||||||||| |  ||||||||||| |||| ||||  ||||||||||| ||||||||||| |||||| ||||| ||||    
T  44336768 taacgccctatttgagaaacctcaaaaaatccagcctgacgtagataatcttgaataaaaggacttggtactatgtgttgtcgtgtacgagtgacaagag 44336669  T
Q  201 gtgcaccctctgcatcctaac 221  Q
    || ||||||||||||||||||    
T  44336668 gtacaccctctgcatcctaac 44336648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 51; E-Value: 5e-20
Query Start/End: Original strand, 350 - 436
Target Start/End: Complemental strand, 36629505 - 36629419
Alignment:
Q  350 attaacaaattaatctttatatatacccatcttctgatatgttcttaattggatctatgatcattttcaaaccacaagtatgccatt 436  Q
    |||||||||||||| || |||||||||||||||||||| |||| ||   |||||||| |||||||||| ||||||||||||||||||    
T  36629505 attaacaaattaatattcatatatacccatcttctgatgtgtttttccgtggatctaagatcattttccaaccacaagtatgccatt 36629419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 324 - 460
Target Start/End: Original strand, 6002422 - 6002559
Alignment:
Q  324 attaataattaaaaaatgaaaacgacattaacaaat-taatctttatatatacccatcttctgatatgttcttaattggatctatgatcattttcaaacc 422  Q
    |||||||||||||||||  |||||| ||||| |||  ||||  | |||||||||||| ||||||| |||| ||   || | ||||| |||||||| ||||    
T  6002422 attaataattaaaaaatataaacgaaattaataaaaataatagtcatatatacccattttctgatgtgttgttccatgaacctatgttcattttccaacc 6002521  T
Q  423 acaagtatgccattactttatataatttgtttgaaata 460  Q
    |||||||||||||| |||| ||||||||||||||||||    
T  6002522 acaagtatgccattgctttgtataatttgtttgaaata 6002559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 1 - 60
Target Start/End: Complemental strand, 34507228 - 34507169
Alignment:
Q  1 ttccaacgtgattgtgcattcacccgttcgaaaatgaaaagtatgtgtttcagaccgcca 60  Q
    ||||||||||||||| ||||||||| ||||||||||||||||||||||||| ||||||||    
T  34507228 ttccaacgtgattgtacattcacccattcgaaaatgaaaagtatgtgtttcggaccgcca 34507169  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 350 - 436
Target Start/End: Complemental strand, 44336597 - 44336511
Alignment:
Q  350 attaacaaattaatctttatatatacccatcttctgatatgttcttaattggatctatgatcattttcaaaccacaagtatgccatt 436  Q
    |||||||||||||| || |||||||||||||||||||| |||||||   |  |||||| ||||||||| ||||||||||||||||||    
T  44336597 attaacaaattaatattcatatatacccatcttctgatgtgttcttccgtacatctattatcattttccaaccacaagtatgccatt 44336511  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 46; E-Value: 5e-17
Query Start/End: Original strand, 1 - 90
Target Start/End: Original strand, 6002095 - 6002184
Alignment:
Q  1 ttccaacgtgattgtgcattcacccgttcgaaaatgaaaagtatgtgtttcagaccgccacctttctacaagagcggttacgatgtgtct 90  Q
    ||||| ||||||||| |||||||  ||||||||||||||||||||||| || || | ||| |||||||||||||||||||| || |||||    
T  6002095 ttccagcgtgattgtacattcacttgttcgaaaatgaaaagtatgtgtctcggatcaccatctttctacaagagcggttacaatatgtct 6002184  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 161 - 221
Target Start/End: Original strand, 6002195 - 6002255
Alignment:
Q  161 ggacttggtattatgtgttgtcttgtacgggtgacgagaggtgcaccctctgcatcctaac 221  Q
    |||||||||  ||||||||||| |||||| |||   ||||||||||||||| |||||||||    
T  6002195 ggacttggttgtatgtgttgtcgtgtacgagtgcttagaggtgcaccctcttcatcctaac 6002255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 161; Significance: 1e-85; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 161; E-Value: 1e-85
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 26336669 - 26336449
Alignment:
Q  1 ttccaacgtgattgtgcattcacccgttcgaaaatgaaaagtatgtgtttcagaccgccacctttctacaagagcggttacgatgtgtctatcgattttg 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| ||||||    
T  26336669 ttccaacgtgattgtacattcacccgttcgaaaatgaaaagtatgtgtttcggaccgccatctttctacaagagcggttacgatgtgtctatcaattttg 26336570  T
Q  101 taacgccctatttgagaaacctcaaaaaatccggtttgacgtagatactcttcaatatgaggacttggtattatgtgttgtcttgtacgggtgacgagag 200  Q
    |||||||||||||||||||||||||||||| | | |||||||||||| |||||||||| |||||||||||| |||||||| | |||||| ||||  ||||    
T  26336569 taacgccctatttgagaaacctcaaaaaattcagcttgacgtagataatcttcaatataaggacttggtatgatgtgttgccgtgtacgagtgattagag 26336470  T
Q  201 gtgcaccctctgcatcctaac 221  Q
    |||||||||||||||||||||    
T  26336469 gtgcaccctctgcatcctaac 26336449  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 125; E-Value: 4e-64
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 22026760 - 22026540
Alignment:
Q  1 ttccaacgtgattgtgcattcacccgttcgaaaatgaaaagtatgtgtttcagaccgccacctttctacaagagcggttacgatgtgtctatcgattttg 100  Q
    |||||| ||||| || || |||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||| |||||| ||||| ||||| ||||||    
T  22026760 ttccaaagtgatagtacactcacccgttcgaaagtgaaaagtatgggtttcggaccgccatctttctacaagagtggttacaatgtgcctatcaattttg 22026661  T
Q  101 taacgccctatttgagaaacctcaaaaaatccggtttgacgtagatactcttcaatatgaggacttggtattatgtgttgtcttgtacgggtgacgagag 200  Q
    |||||||||||||||||||||||||||||||| |  ||||||||||| |||| ||||  ||||||||||| ||||||||||| |||||| ||||| ||||    
T  22026660 taacgccctatttgagaaacctcaaaaaatccagcctgacgtagataatcttgaataaaaggacttggtactatgtgttgtcgtgtacgagtgacaagag 22026561  T
Q  201 gtgcaccctctgcatcctaac 221  Q
    || ||||||||||||||||||    
T  22026560 gtacaccctctgcatcctaac 22026540  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 101; E-Value: 8e-50
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 13051596 - 13051381
Alignment:
Q  1 ttccaacgtgattgtgcattcacccgttcgaaaatgaaaagtatgtgtttcagaccgccacctttctacaagagcggttacgatgtgtctatcgattttg 100  Q
    ||||||| ||||||| || |||||||||||||||| |||||||||||| || |||| ||| |||||||||||     ||| |||||  ||||| ||||||    
T  13051596 ttccaacatgattgtacactcacccgttcgaaaataaaaagtatgtgtctcggaccaccatctttctacaag-----ttatgatgtacctatcaattttg 13051502  T
Q  101 taacgccctatttgagaaacctcaaaaaatccggtttgacgtagatactcttcaatatgaggacttggtattatgtgttgtcttgtacgggtgacgagag 200  Q
    |||||| ||||||||| ||||||||||||||| | |||||||||||| || ||||||  ||||||||||||||||||||||| |||||| |||   ||||    
T  13051501 taacgctctatttgagtaacctcaaaaaatccagcttgacgtagataatcctcaataaaaggacttggtattatgtgttgtcgtgtacgagtggttagag 13051402  T
Q  201 gtgcaccctctgcatcctaac 221  Q
    |||||||||||||||||||||    
T  13051401 gtgcaccctctgcatcctaac 13051381  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 90; E-Value: 3e-43
Query Start/End: Original strand, 331 - 460
Target Start/End: Complemental strand, 26336372 - 26336243
Alignment:
Q  331 attaaaaaatgaaaacgacattaacaaattaatctttatatatacccatcttctgatatgttcttaattggatctatgatcattttcaaaccacaagtat 430  Q
    |||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||   ||||||||||||||||||| ||||||||||||    
T  26336372 attaaaaaataaaaacgacattaacaaattaatatctatatatacccatcttctgatatgttcttccatggatctatgatcattttccaaccacaagtat 26336273  T
Q  431 gccattactttatataatttgtttgaaata 460  Q
    | |||| |||||||||||||| ||||||||    
T  26336272 gtcattgctttatataatttgattgaaata 26336243  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 77; E-Value: 2e-35
Query Start/End: Original strand, 324 - 460
Target Start/End: Complemental strand, 13051184 - 13051048
Alignment:
Q  324 attaataattaaaaaatgaaaacgacattaacaaattaatctttatatatacccatcttctgatatgttcttaattggatctatgatcattttcaaacca 423  Q
    ||||||||||||||||| ||||| | |||||||||||||| |||||| |||||||| ||||||| |||||||   ||||||||||||||||||| |||||    
T  13051184 attaataattaaaaaataaaaacaaaattaacaaattaatatttatacatacccattttctgatgtgttcttccatggatctatgatcattttccaacca 13051085  T
Q  424 caagtatgccattactttatataatttgtttgaaata 460  Q
    ||| |||| ||||  ||||||||||||||||||||||    
T  13051084 caaatatgtcattgttttatataatttgtttgaaata 13051048  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 47; E-Value: 1e-17
Query Start/End: Original strand, 350 - 436
Target Start/End: Complemental strand, 22026489 - 22026403
Alignment:
Q  350 attaacaaattaatctttatatatacccatcttctgatatgttcttaattggatctatgatcattttcaaaccacaagtatgccatt 436  Q
    |||||||||||||| || |||||||||||||||||||| |||||||   |  |||||| ||||||||| ||||||||||||||||||    
T  22026489 attaacaaattaatattcatatatacccatcttctgatgtgttcttccgtacatctattatcattttccaaccacaagtatgccatt 22026403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 141; Significance: 1e-73; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 5055481 - 5055701
Alignment:
Q  1 ttccaacgtgattgtgcattcacccgttcgaaaatgaaaagtatgtgtttcagaccgccacctttctacaagagcggttacgatgtgtctatcgattttg 100  Q
    |||||| ||||| || ||||||||||||||||||||||||||||||||||| |||||||| |||||||||||||||||||| ||||| ||||| ||||||    
T  5055481 ttccaaagtgatagtacattcacccgttcgaaaatgaaaagtatgtgtttcggaccgccatctttctacaagagcggttacaatgtgcctatcaattttg 5055580  T
Q  101 taacgccctatttgagaaacctcaaaaaatccggtttgacgtagatactcttcaatatgaggacttggtattatgtgttgtcttgtacgggtgacgagag 200  Q
    |||||||||||||||||||||||||| ||||| | |||||||||||| |||||||||  ||||||||||||||||||||||| |||||| |||   ||||    
T  5055581 taacgccctatttgagaaacctcaaagaatccaggttgacgtagataatcttcaataaaaggacttggtattatgtgttgtcgtgtacgagtggttagag 5055680  T
Q  201 gtgcaccctctgcatcctaac 221  Q
    |||||| ||||||||||||||    
T  5055681 gtgcactctctgcatcctaac 5055701  T

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Target: chr4; HSP #2
Raw Score: 141; E-Value: 1e-73
Query Start/End: Original strand, 5 - 221
Target Start/End: Original strand, 10227005 - 10227221
Alignment:
Q  5 aacgtgattgtgcattcacccgttcgaaaatgaaaagtatgtgtttcagaccgccacctttctacaagagcggttacgatgtgtctatcgattttgtaac 104  Q
    ||||||||||| ||||||||||||||||||||||||||||||||||| |||||| | ||||||||||||| |||||||||||| ||||| ||||||||||    
T  10227005 aacgtgattgtacattcacccgttcgaaaatgaaaagtatgtgtttcggaccgctatctttctacaagagtggttacgatgtgcctatcaattttgtaac 10227104  T
Q  105 gccctatttgagaaacctcaaaaaatccggtttgacgtagatactcttcaatatgaggacttggtattatgtgttgtcttgtacgggtgacgagaggtgc 204  Q
    |||||||||||||||||||||||||||| | |||||||||||| |||||||||| |||||||||||| |||| ||| | |||||| |||   ||||||||    
T  10227105 gccctatttgagaaacctcaaaaaatccagcttgacgtagataatcttcaatataaggacttggtatgatgttttgccgtgtacgagtggttagaggtgc 10227204  T
Q  205 accctctgcatcctaac 221  Q
    |||||||||||||||||    
T  10227205 accctctgcatcctaac 10227221  T

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Target: chr4; HSP #3
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 221
Target Start/End: Original strand, 20170341 - 20170561
Alignment:
Q  1 ttccaacgtgattgtgcattcacccgttcgaaaatgaaaagtatgtgtttcagaccgccacctttctacaagagcggttacgatgtgtctatcgattttg 100  Q
    |||||| ||||| || || |||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||| |||||| ||||| ||||| ||||||    
T  20170341 ttccaaagtgatagtacactcacccgttcgaaagtgaaaagtatgggtttcggaccgccatctttctacaagagtggttacaatgtgcctatcaattttg 20170440  T
Q  101 taacgccctatttgagaaacctcaaaaaatccggtttgacgtagatactcttcaatatgaggacttggtattatgtgttgtcttgtacgggtgacgagag 200  Q
    |||||||||||||||||||||||||||||||| | |||||||||||| |||| ||||  ||||||||||| ||||||||||| |||||| ||||| ||||    
T  20170441 taacgccctatttgagaaacctcaaaaaatccagcttgacgtagataatcttgaataaaaggacttggtactatgtgttgtcgtgtacgagtgacaagag 20170540  T
Q  201 gtgcaccctctgcatcctaac 221  Q
    || ||||||||||||||||||    
T  20170541 gtacaccctctgcatcctaac 20170561  T

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Target: chr4; HSP #4
Raw Score: 94; E-Value: 1e-45
Query Start/End: Original strand, 331 - 460
Target Start/End: Original strand, 19136872 - 19137001
Alignment:
Q  331 attaaaaaatgaaaacgacattaacaaattaatctttatatatacccatcttctgatatgttcttaattggatctatgatcattttcaaaccacaagtat 430  Q
    |||||||||| |||||||||||||||||||||| | |||||||||||||||||||||||||||||   ||||||||||||||||||| ||||||||||||    
T  19136872 attaaaaaataaaaacgacattaacaaattaatatctatatatacccatcttctgatatgttcttccatggatctatgatcattttccaaccacaagtat 19136971  T
Q  431 gccattactttatataatttgtttgaaata 460  Q
    |||||| |||||||||||||| ||||||||    
T  19136972 gccattgctttatataatttgattgaaata 19137001  T

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Target: chr4; HSP #5
Raw Score: 85; E-Value: 3e-40
Query Start/End: Original strand, 89 - 221
Target Start/End: Original strand, 19136663 - 19136795
Alignment:
Q  89 ctatcgattttgtaacgccctatttgagaaacctcaaaaaatccggtttgacgtagatactcttcaatatgaggacttggtattatgtgttgtcttgtac 188  Q
    ||||| |||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||| |||||||||||| |||||||| | |||||    
T  19136663 ctatcaattttgtaacgccctatttgagaaacctcaaaaaatccagcttgacgtagataatcttcaatataaggacttggtatgatgtgttgccgtgtac 19136762  T
Q  189 gggtgacgagaggtgcaccctctgcatcctaac 221  Q
    | |||   |||||||||||||||||||||||||    
T  19136763 gagtggttagaggtgcaccctctgcatcctaac 19136795  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 82; E-Value: 2e-38
Query Start/End: Original strand, 331 - 460
Target Start/End: Original strand, 10227298 - 10227427
Alignment:
Q  331 attaaaaaatgaaaacgacattaacaaattaatctttatatatacccatcttctgatatgttcttaattggatctatgatcattttcaaaccacaagtat 430  Q
    |||||||||| |||| ||||||||||||||||| | |||||||||||||||||| ||||||||||   ||||||||||||||||||| ||||||||||||    
T  10227298 attaaaaaataaaaatgacattaacaaattaatatctatatatacccatcttcttatatgttcttccatggatctatgatcattttccaaccacaagtat 10227397  T
Q  431 gccattactttatataatttgtttgaaata 460  Q
    |||||| ||||||| |||||| ||||||||    
T  10227398 gccattgctttatagaatttgattgaaata 10227427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 59; E-Value: 9e-25
Query Start/End: Original strand, 350 - 436
Target Start/End: Original strand, 20170612 - 20170698
Alignment:
Q  350 attaacaaattaatctttatatatacccatcttctgatatgttcttaattggatctatgatcattttcaaaccacaagtatgccatt 436  Q
    |||||||||||||| || |||||||||||||||||||| |||||||   ||||||||||||||||||| ||||||||||||||||||    
T  20170612 attaacaaattaatattcatatatacccatcttctgatgtgttcttccgtggatctatgatcattttccaaccacaagtatgccatt 20170698  T

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Target: chr4; HSP #8
Raw Score: 53; E-Value: 3e-21
Query Start/End: Original strand, 332 - 428
Target Start/End: Original strand, 5055734 - 5055830
Alignment:
Q  332 ttaaaaaatgaaaacgacattaacaaattaatctttatatatacccatcttctgatatgttcttaattggatctatgatcattttcaaaccacaagt 428  Q
    |||||||||||||   | |||||||||||||| || |||||||||||||||||||| |||||||   ||||||||||||||||||| ||||||||||    
T  5055734 ttaaaaaatgaaagtaaaattaacaaattaatattcatatatacccatcttctgatgtgttcttccatggatctatgatcattttccaaccacaagt 5055830  T

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Target: chr3 (Bit Score: 133; Significance: 6e-69; HSPs: 3)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 133; E-Value: 6e-69
Query Start/End: Original strand, 1 - 189
Target Start/End: Original strand, 13112678 - 13112866
Alignment:
Q  1 ttccaacgtgattgtgcattcacccgttcgaaaatgaaaagtatgtgtttcagaccgccacctttctacaagagcggttacgatgtgtctatcgattttg 100  Q
    ||||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||  |||| ||||||    
T  13112678 ttccaacgtgattgtacattcacccgttcgaaaatgaaaagtatgtgtttcggaccgccatctttctacaagagcggttacgatgtgcttatcaattttg 13112777  T
Q  101 taacgccctatttgagaaacctcaaaaaatccggtttgacgtagatactcttcaatatgaggacttggtattatgtgttgtcttgtacg 189  Q
    ||||||||||||| |||||||||||||||||| | |||||||||||| |||||||||| |||||||||| | |||||||||| ||||||    
T  13112778 taacgccctattttagaaacctcaaaaaatccagcttgacgtagataatcttcaatataaggacttggtgtgatgtgttgtcgtgtacg 13112866  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 121; E-Value: 9e-62
Query Start/End: Original strand, 1 - 221
Target Start/End: Complemental strand, 26525661 - 26525441
Alignment:
Q  1 ttccaacgtgattgtgcattcacccgttcgaaaatgaaaagtatgtgtttcagaccgccacctttctacaagagcggttacgatgtgtctatcgattttg 100  Q
    |||||| ||||| || || |||||||||||||| ||||||||||| ||||| |||||||| ||||||||||||| |||||| ||||| ||||| ||||||    
T  26525661 ttccaaagtgatagtacactcacccgttcgaaagtgaaaagtatgggtttcggaccgccatctttctacaagagtggttacaatgtgcctatcaattttg 26525562  T
Q  101 taacgccctatttgagaaacctcaaaaaatccggtttgacgtagatactcttcaatatgaggacttggtattatgtgttgtcttgtacgggtgacgagag 200  Q
    |||||||||||||||||||||||||||||||  |  ||||||||||| |||| ||||  ||||||||||| ||||||||||| |||||| ||||| ||||    
T  26525561 taacgccctatttgagaaacctcaaaaaatctagcctgacgtagataatcttgaataaaaggacttggtactatgtgttgtcgtgtacgagtgacaagag 26525462  T
Q  201 gtgcaccctctgcatcctaac 221  Q
    || ||||||||||||||||||    
T  26525461 gtacaccctctgcatcctaac 26525441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 55; E-Value: 2e-22
Query Start/End: Original strand, 350 - 436
Target Start/End: Complemental strand, 26525390 - 26525304
Alignment:
Q  350 attaacaaattaatctttatatatacccatcttctgatatgttcttaattggatctatgatcattttcaaaccacaagtatgccatt 436  Q
    |||||||||||||| || |||||||||||||||||||| |||||||   | ||||||||||||||||| ||||||||||||||||||    
T  26525390 attaacaaattaatattcatatatacccatcttctgatgtgttcttccgtagatctatgatcattttccaaccacaagtatgccatt 26525304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0504 (Bit Score: 128; Significance: 6e-66; HSPs: 2)
Name: scaffold0504
Description:

Target: scaffold0504; HSP #1
Raw Score: 128; E-Value: 6e-66
Query Start/End: Original strand, 1 - 216
Target Start/End: Complemental strand, 4281 - 4066
Alignment:
Q  1 ttccaacgtgattgtgcattcacccgttcgaaaatgaaaagtatgtgtttcagaccgccacctttctacaagagcggttacgatgtgtctatcgattttg 100  Q
    ||||||||||||||| |||||||| ||||||||||||||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||| ||||||    
T  4281 ttccaacgtgattgtacattcacctgttcgaaaatgaaaagtatgtgtctcagaccgccatctttctacaagagcggttacgatgtgcctatcaattttg 4182  T
Q  101 taacgccctatttgagaaacctcaaaaaatccggtttgacgtagatactcttcaatatgaggacttggtattatgtgttgtcttgtacgggtgacgagag 200  Q
    ||||||||||||| || ||||||| ||||||| | ||| |||||||| || ||||||  ||||||||||||||||||||||| |||||| |||   ||||    
T  4181 taacgccctatttaagtaacctcataaaatccagcttggcgtagataatcctcaataaaaggacttggtattatgtgttgtcgtgtacgagtggttagag 4082  T
Q  201 gtgcaccctctgcatc 216  Q
    ||||||||||| ||||    
T  4081 gtgcaccctctacatc 4066  T

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Target: scaffold0504; HSP #2
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 324 - 460
Target Start/End: Complemental strand, 3856 - 3720
Alignment:
Q  324 attaataattaaaaaatgaaaacgacattaacaaattaatctttatatatacccatcttctgatatgttcttaattggatctatgatcattttcaaacca 423  Q
    ||||||||||||||||| ||||||| |||||||||||||| ||||||||||| ||||||||||| |||||||   ||||||||||||||||||| |||||    
T  3856 attaataattaaaaaataaaaacgaaattaacaaattaatatttatatatacacatcttctgatgtgttcttccatggatctatgatcattttccaacca 3757  T
Q  424 caagtatgccattactttatataatttgtttgaaata 460  Q
    ||||||||||||| |||||||||||||||||||||||    
T  3756 caagtatgccattgctttatataatttgtttgaaata 3720  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 91; Significance: 7e-44; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 91; E-Value: 7e-44
Query Start/End: Original strand, 1 - 91
Target Start/End: Original strand, 37170924 - 37171014
Alignment:
Q  1 ttccaacgtgattgtgcattcacccgttcgaaaatgaaaagtatgtgtttcagaccgccacctttctacaagagcggttacgatgtgtcta 91  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  37170924 ttccaacgtgattgtgcattcacccgttcgaaaatgaaaagtatgtgtttcagaccgccacctttctacaagagcggttacgatgtgtcta 37171014  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 1 - 102
Target Start/End: Original strand, 9214079 - 9214180
Alignment:
Q  1 ttccaacgtgattgtgcattcacccgttcgaaaatgaaaagtatgtgtttcagaccgccacctttctacaagagcggttacgatgtgtctatcgattttg 100  Q
    |||||| ||||| ||||||||||||||| |||||||||| || |||||||| |  | ||| ||||| || |||||  ||| ||| |||||||| ||||||    
T  9214079 ttccaaggtgatggtgcattcacccgttggaaaatgaaacgtgtgtgtttcgggtctccatctttcaactagagcatttaggatatgtctatccattttg 9214178  T
Q  101 ta 102  Q
    ||    
T  9214179 ta 9214180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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