View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6421_low_3 (Length: 239)
Name: NF6421_low_3
Description: NF6421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6421_low_3 |
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| [»] chr5 (2 HSPs) |
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Alignment Details
Target: chr5 (Bit Score: 85; Significance: 1e-40; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 85; E-Value: 1e-40
Query Start/End: Original strand, 135 - 239
Target Start/End: Complemental strand, 12956824 - 12956720
Alignment:
| Q |
135 |
gctcttacaacttgtttgtacattacatgctaatgaacaagactatgaactgtcaagttagaaggaaagatccccaatcaaacatgtatgcacaatttga |
234 |
Q |
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| T |
12956824 |
gctcttacaacttgtttgtacattacatgctaatgaacaagactaagatctgtccagttagaaggaagcatccccaatcaaacatgtatgcacaatttga |
12956725 |
T |
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| Q |
235 |
gaaga |
239 |
Q |
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||||| |
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| T |
12956724 |
gaaga |
12956720 |
T |
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Target: chr5; HSP #2
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 7 - 73
Target Start/End: Complemental strand, 12956950 - 12956884
Alignment:
| Q |
7 |
tccaagaatatattgcctaatgtaaaacttgtcaaagtaaaagaatcgaaaccattatggttatcaa |
73 |
Q |
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| T |
12956950 |
tccaataatatattgcctaatgtaaaacttgtcaaagtaaaagaatcgaaaccattatggttatcaa |
12956884 |
T |
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