View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6421_low_5 (Length: 237)
Name: NF6421_low_5
Description: NF6421
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6421_low_5 |
 | |
|
| [»] scaffold0170 (1 HSPs) |
| | |
|
| [»] scaffold0504 (1 HSPs) |
| | |
|
Alignment Details
Target: chr8 (Bit Score: 221; Significance: 1e-122; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 42609290 - 42609062
Alignment:
| Q |
1 |
aaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
42609290 |
aaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaaca |
42609191 |
T |
|
| Q |
101 |
atgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgttgttgcagacagaaaggctttagcatgggtcgacaatattcccaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
42609190 |
atgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattcccaa |
42609091 |
T |
|
| Q |
201 |
acaaaagtggactcaatcacatgatgatg |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
42609090 |
acaaaagtggactcaatcacatgatgatg |
42609062 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 2 - 229
Target Start/End: Complemental strand, 8590628 - 8590401
Alignment:
| Q |
2 |
aagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaacaa |
101 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| | |||||| |
|
|
| T |
8590628 |
aagaagaaagttgaaggcatgggtaaaaatcatatctctttccacgtaaattcgacatattatttgtttaaaaagacacatctaactttttcccaaacaa |
8590529 |
T |
|
| Q |
102 |
tgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgttgttgcagacagaaaggctttagcatgggtcgacaatattcccaaa |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
8590528 |
tgcaggttacgccatgaacatccctacattcgaatattaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattcccaaa |
8590429 |
T |
|
| Q |
202 |
caaaagtggactcaatcacatgatgatg |
229 |
Q |
| |
|
||||||||||||||||||||||| |||| |
|
|
| T |
8590428 |
caaaagtggactcaatcacatgacgatg |
8590401 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 221; Significance: 1e-122; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 34830296 - 34830068
Alignment:
| Q |
1 |
aaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34830296 |
aaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaaca |
34830197 |
T |
|
| Q |
101 |
atgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgttgttgcagacagaaaggctttagcatgggtcgacaatattcccaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
34830196 |
atgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattcccaa |
34830097 |
T |
|
| Q |
201 |
acaaaagtggactcaatcacatgatgatg |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
34830096 |
acaaaagtggactcaatcacatgatgatg |
34830068 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 2 - 229
Target Start/End: Complemental strand, 46485751 - 46485524
Alignment:
| Q |
2 |
aagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaacaa |
101 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||| |||||||||||||| ||||||||||||||||| | |||||| |
|
|
| T |
46485751 |
aagaagaaagttgaaggcatgggtaaaaatcatatctctttcaacgtaaattcgacatattatttgtttaaaaagacacatctaactttttcccaaacaa |
46485652 |
T |
|
| Q |
102 |
tgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgttgttgcagacagaaaggctttagcatgggtcgacaatattcccaaa |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
46485651 |
tgcaggttacgccatgaacatccctacattcgaatattaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattcccaaa |
46485552 |
T |
|
| Q |
202 |
caaaagtggactcaatcacatgatgatg |
229 |
Q |
| |
|
||||||||||||||||||||||| |||| |
|
|
| T |
46485551 |
caaaagtggactcaatcacatgacgatg |
46485524 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 37171017 - 37171079
Alignment:
| Q |
167 |
gaaaggctttagcatgggtcgacaatattcccaaacaaaagtggactcaatcacatgatgatg |
229 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37171017 |
gaaaggctttagcatgggtcgacaatattcccaaacaaaagtggactcaatcacatgatgatg |
37171079 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 221; Significance: 1e-122; HSPs: 8)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 1380124 - 1380352
Alignment:
| Q |
1 |
aaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
1380124 |
aaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaaca |
1380223 |
T |
|
| Q |
101 |
atgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgttgttgcagacagaaaggctttagcatgggtcgacaatattcccaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
1380224 |
atgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattcccaa |
1380323 |
T |
|
| Q |
201 |
acaaaagtggactcaatcacatgatgatg |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
1380324 |
acaaaagtggactcaatcacatgatgatg |
1380352 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 20086306 - 20086078
Alignment:
| Q |
1 |
aaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
20086306 |
aaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaaca |
20086207 |
T |
|
| Q |
101 |
atgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgttgttgcagacagaaaggctttagcatgggtcgacaatattcccaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
20086206 |
atgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattcccaa |
20086107 |
T |
|
| Q |
201 |
acaaaagtggactcaatcacatgatgatg |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
20086106 |
acaaaagtggactcaatcacatgatgatg |
20086078 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 30825476 - 30825704
Alignment:
| Q |
1 |
aaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
30825476 |
aaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaaca |
30825575 |
T |
|
| Q |
101 |
atgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgttgttgcagacagaaaggctttagcatgggtcgacaatattcccaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
30825576 |
atgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattcccaa |
30825675 |
T |
|
| Q |
201 |
acaaaagtggactcaatcacatgatgatg |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
30825676 |
acaaaagtggactcaatcacatgatgatg |
30825704 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #4
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 19421421 - 19421193
Alignment:
| Q |
1 |
aaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
19421421 |
aaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaaca |
19421322 |
T |
|
| Q |
101 |
atgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgttgttgcagacagaaaggctttagcatgggtcgacaatattcccaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||| ||||||||||| |
|
|
| T |
19421321 |
atgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgaaaatattcccaa |
19421222 |
T |
|
| Q |
201 |
acaaaagtggactcaatcacatgatgatg |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
19421221 |
acaaaagtggactcaatcacatgatgatg |
19421193 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #5
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 765716 - 765488
Alignment:
| Q |
1 |
aaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaaca |
100 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
765716 |
aaagaaaaaagttgcatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaaca |
765617 |
T |
|
| Q |
101 |
atgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgttgttgcagacagaaaggctttagcatgggtcgacaatattcccaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
765616 |
atgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattcccaa |
765517 |
T |
|
| Q |
201 |
acaaaagtggactcaatcacatgatgatg |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
765516 |
acaaaagtggactcaatcacatgatgatg |
765488 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #6
Raw Score: 194; E-Value: 1e-105
Query Start/End: Original strand, 2 - 223
Target Start/End: Complemental strand, 19680349 - 19680128
Alignment:
| Q |
2 |
aagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaacaa |
101 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| | |||||| |
|
|
| T |
19680349 |
aagaagaaagttgaaggcatgggtaaaaatcatatctctttccacgtaaattcgacatattatttgtttaaaaagacacatctaactttttcccaaacaa |
19680250 |
T |
|
| Q |
102 |
tgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgttgttgcagacagaaaggctttagcatgggtcgacaatattcccaaa |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
19680249 |
tgcaggttacgccatgaacatccctacattcgaatattaccgttctgaaattgttgttgcagaccgaaaggctttagcatgggtcgacaatattcccaaa |
19680150 |
T |
|
| Q |
202 |
caaaagtggactcaatcacatg |
223 |
Q |
| |
|
|||||||||||||||||||||| |
|
|
| T |
19680149 |
caaaagtggactcaatcacatg |
19680128 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #7
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 2 - 229
Target Start/End: Complemental strand, 41374427 - 41374200
Alignment:
| Q |
2 |
aagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaacaa |
101 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| | |||||| |
|
|
| T |
41374427 |
aagaagaaagttgaaggcatgggtaaaaatcatatctctttccacgtaaattcgacatattatttgtttaaaaagacacatctaactttttcccaaacaa |
41374328 |
T |
|
| Q |
102 |
tgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgttgttgcagacagaaaggctttagcatgggtcgacaatattcccaaa |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
41374327 |
tgcaggttacgccatgaacatccctacattcgaatattaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattcccaaa |
41374228 |
T |
|
| Q |
202 |
caaaagtggactcaatcacatgatgatg |
229 |
Q |
| |
|
||||||||||||||||||||||| |||| |
|
|
| T |
41374227 |
caaaagtggactcaatcacatgacgatg |
41374200 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #8
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 2 - 229
Target Start/End: Complemental strand, 30663380 - 30663152
Alignment:
| Q |
2 |
aagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaa-atgacacatctaacttttttcaaaaca |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||| ||| |||| |||||||| ||||||||||||| | ||||||||||| ||||||||||||| |
|
|
| T |
30663380 |
aagaagaaagttgaaggcatgggtaaaaattatatctctatccttgtaatttcgacatattatttgtttaaagaagacacatctaaattttttcaaaaca |
30663281 |
T |
|
| Q |
101 |
atgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgttgttgcagacagaaaggctttagcatgggtcgacaatattcccaa |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| |||||||| | ||| || ||| | ||||||||||||||||||||||| |||||||| |
|
|
| T |
30663280 |
atgcaggttacgccatgaacatcccaacattcgaatactaccgctctgaaatcgctgtcgcggaccggaaggctttagcatgggtcgacaacattcccaa |
30663181 |
T |
|
| Q |
201 |
acaaaagtggactcaatcacatgatgatg |
229 |
Q |
| |
|
| ||||||||||||||||||||||||||| |
|
|
| T |
30663180 |
agaaaagtggactcaatcacatgatgatg |
30663152 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 221; Significance: 1e-122; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 10229940 - 10230168
Alignment:
| Q |
1 |
aaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
10229940 |
aaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaaca |
10230039 |
T |
|
| Q |
101 |
atgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgttgttgcagacagaaaggctttagcatgggtcgacaatattcccaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
10230040 |
atgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattcccaa |
10230139 |
T |
|
| Q |
201 |
acaaaagtggactcaatcacatgatgatg |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
10230140 |
acaaaagtggactcaatcacatgatgatg |
10230168 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 204; E-Value: 1e-111
Query Start/End: Original strand, 2 - 229
Target Start/End: Original strand, 5058235 - 5058462
Alignment:
| Q |
2 |
aagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaacaa |
101 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
5058235 |
aagaagaaagttgaaggcatgggtaaaaatcatatctctttccacgtaaattcgacatattatttgtttaaaaagacacatctaacttttttcaaaacaa |
5058334 |
T |
|
| Q |
102 |
tgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgttgttgcagacagaaaggctttagcatgggtcgacaatattcccaaa |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
5058335 |
tgcaggttacgccatgaacatccctacattcgaatattaccgttctgaaattgttgttgcagaccgaaaggctttagcatgggtcgacaatattcccaaa |
5058434 |
T |
|
| Q |
202 |
caaaagtggactcaatcacatgatgatg |
229 |
Q |
| |
|
||||||||||||||||||||||| |||| |
|
|
| T |
5058435 |
caaaagtggactcaatcacatgacgatg |
5058462 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 2 - 229
Target Start/End: Original strand, 20173129 - 20173356
Alignment:
| Q |
2 |
aagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaacaa |
101 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| | |||||| |
|
|
| T |
20173129 |
aagaagaaagttgaaggcatgggtaaaaatcatatctctttccacgtaaattcgacatattatttgtttaaaaagacacatctaactttttcccaaacaa |
20173228 |
T |
|
| Q |
102 |
tgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgttgttgcagacagaaaggctttagcatgggtcgacaatattcccaaa |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
20173229 |
tgcaggttacgccatgaacatccctacattcgaatattaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattcccaaa |
20173328 |
T |
|
| Q |
202 |
caaaagtggactcaatcacatgatgatg |
229 |
Q |
| |
|
||||||||||||||||||||||| |||| |
|
|
| T |
20173329 |
caaaagtggactcaatcacatgacgatg |
20173356 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 96 - 229
Target Start/End: Complemental strand, 18379753 - 18379620
Alignment:
| Q |
96 |
aaacaatgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgttgttgcagacagaaaggctttagcatgggtcgacaatatt |
195 |
Q |
| |
|
|||||||||||| || || |||||||| || | ||||| |||||||| |||||| | ||||||||| || | |||||||| || |||||| | ||| |
|
|
| T |
18379753 |
aaacaatgcaggatatgcgatgaacataccctctttcgagtactaccgcaatgaaatcgcagttgcagaccgacaagctttagcttgagtcgacgacatt |
18379654 |
T |
|
| Q |
196 |
cccaaacaaaagtggactcaatcacatgatgatg |
229 |
Q |
| |
|
| |||| |||||||||||||||| |||||||||| |
|
|
| T |
18379653 |
ctcaaagaaaagtggactcaatcgcatgatgatg |
18379620 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 221; Significance: 1e-122; HSPs: 9)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 11746498 - 11746270
Alignment:
| Q |
1 |
aaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
11746498 |
aaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaaca |
11746399 |
T |
|
| Q |
101 |
atgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgttgttgcagacagaaaggctttagcatgggtcgacaatattcccaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
11746398 |
atgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattcccaa |
11746299 |
T |
|
| Q |
201 |
acaaaagtggactcaatcacatgatgatg |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
11746298 |
acaaaagtggactcaatcacatgatgatg |
11746270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 221; E-Value: 1e-122
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 37018713 - 37018941
Alignment:
| Q |
1 |
aaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
37018713 |
aaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaaca |
37018812 |
T |
|
| Q |
101 |
atgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgttgttgcagacagaaaggctttagcatgggtcgacaatattcccaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
37018813 |
atgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattcccaa |
37018912 |
T |
|
| Q |
201 |
acaaaagtggactcaatcacatgatgatg |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
37018913 |
acaaaagtggactcaatcacatgatgatg |
37018941 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 6900318 - 6900546
Alignment:
| Q |
1 |
aaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaaca |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6900318 |
aaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaaca |
6900417 |
T |
|
| Q |
101 |
atgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgttgttgcagacagaaaggctttagcatgggtcgacaatattcccaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||| |||||| |
|
|
| T |
6900418 |
atgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatactcccaa |
6900517 |
T |
|
| Q |
201 |
acaaaagtggactcaatcacatgatgatg |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
6900518 |
acaaaagtggactcaatcacatgatgatg |
6900546 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #4
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 2 - 229
Target Start/End: Complemental strand, 44334051 - 44333824
Alignment:
| Q |
2 |
aagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaacaa |
101 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| | |||||| |
|
|
| T |
44334051 |
aagaagaaagttgaaggcatgggtaaaaatcatatctctttccacgtaaattcgacatattatttgtttaaaaagacacatctaactttttcccaaacaa |
44333952 |
T |
|
| Q |
102 |
tgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgttgttgcagacagaaaggctttagcatgggtcgacaatattcccaaa |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
44333951 |
tgcaggttacgccatgaacatccctacattcgaatattaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattcccaaa |
44333852 |
T |
|
| Q |
202 |
caaaagtggactcaatcacatgatgatg |
229 |
Q |
| |
|
||||||||||||||||||||||| |||| |
|
|
| T |
44333851 |
caaaagtggactcaatcacatgacgatg |
44333824 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #5
Raw Score: 188; E-Value: 1e-102
Query Start/End: Original strand, 2 - 229
Target Start/End: Complemental strand, 36627965 - 36627738
Alignment:
| Q |
2 |
aagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaacaa |
101 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||| ||||||||| | |||||| |
|
|
| T |
36627965 |
aagaagaaagttgaaggcatgggtaaaaatcatatctctttccacgtaaattcgacatattatttgtttaaaaagacacatttaactttttcccaaacaa |
36627866 |
T |
|
| Q |
102 |
tgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgttgttgcagacagaaaggctttagcatgggtcgacaatattcccaaa |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
36627865 |
tgcaggttacgccatgaacatccctacattcgaatattaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattcccaaa |
36627766 |
T |
|
| Q |
202 |
caaaagtggactcaatcacatgatgatg |
229 |
Q |
| |
|
||||||||||||||||||||||| |||| |
|
|
| T |
36627765 |
caaaagtggactcaatcacatgacgatg |
36627738 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #6
Raw Score: 145; E-Value: 2e-76
Query Start/End: Original strand, 2 - 229
Target Start/End: Original strand, 6004964 - 6005192
Alignment:
| Q |
2 |
aagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaa-atgacacatctaacttttttcaaaaca |
100 |
Q |
| |
|
||||||||||||||| |||||||||||||| |||||||| ||| |||| |||||||| ||||||||||||| | ||||||||||| ||||||||||||| |
|
|
| T |
6004964 |
aagaagaaagttgaaggcatgggtaaaaattatatctctatccttgtaatttcgacatattatttgtttaaagaagacacatctaaattttttcaaaaca |
6005063 |
T |
|
| Q |
101 |
atgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgttgttgcagacagaaaggctttagcatgggtcgacaatattcccaa |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| |||||||| | ||| || ||| | ||||||||||||||||||||||| |||||||| |
|
|
| T |
6005064 |
atgcaggttacgccatgaacatcccaacattcgaatactaccgctctgaaatcgctgtcgcggaccggaaggctttagcatgggtcgacaacattcccaa |
6005163 |
T |
|
| Q |
201 |
acaaaagtggactcaatcacatgatgatg |
229 |
Q |
| |
|
| ||||||||||||||||||||||||||| |
|
|
| T |
6005164 |
agaaaagtggactcaatcacatgatgatg |
6005192 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #7
Raw Score: 143; E-Value: 3e-75
Query Start/End: Original strand, 5 - 229
Target Start/End: Complemental strand, 13721704 - 13721478
Alignment:
| Q |
5 |
aagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacatttt-atttgtttaaaatgacacatctaacttttttcaaaacaat- |
102 |
Q |
| |
|
|||||||||||| ||||||||||||||| ||| |||| | ||||||||| ||| | | |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
13721704 |
aagaaagttgaaggcatgggtaaaaatcttattcctttactcgtaaattcaacaatatgatttgtttaaaaagacacatctaacttttttcaaaacatcc |
13721605 |
T |
|
| Q |
103 |
gcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgttgttgcagacagaaaggctttagcatgggtcgacaatattcccaaac |
202 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||| |||||||| |||||| ||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
13721604 |
gcaggttacgccatgaacatccctacattcgaatactatcgttatgaaattgctgttgcggaccgaaaggctttagcatgggtcgacaatattcccaaac |
13721505 |
T |
|
| Q |
203 |
aaaagtggactcaatcacatgatgatg |
229 |
Q |
| |
|
||||||||||||||||||||||||||| |
|
|
| T |
13721504 |
aaaagtggactcaatcacatgatgatg |
13721478 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #8
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 1736241 - 1736303
Alignment:
| Q |
167 |
gaaaggctttagcatgggtcgacaatattcccaaacaaaagtggactcaatcacatgatgatg |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |
|
|
| T |
1736241 |
gaaaggctttagcatgggtcgacaatattcccaaacaaaagtggactcaatcacatgacgatg |
1736303 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #9
Raw Score: 52; E-Value: 6e-21
Query Start/End: Original strand, 1 - 52
Target Start/End: Original strand, 43803587 - 43803638
Alignment:
| Q |
1 |
aaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaat |
52 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
43803587 |
aaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaat |
43803638 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 213; Significance: 1e-117; HSPs: 2)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 213; E-Value: 1e-117
Query Start/End: Original strand, 1 - 229
Target Start/End: Original strand, 6410567 - 6410795
Alignment:
| Q |
1 |
aaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaaca |
100 |
Q |
| |
|
|||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
6410567 |
aaagaaaaaagttgcatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaaca |
6410666 |
T |
|
| Q |
101 |
atgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgttgttgcagacagaaaggctttagcatgggtcgacaatattcccaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
6410667 |
atgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattcccaa |
6410766 |
T |
|
| Q |
201 |
acaaaagtggactcaatcacatgatgatg |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
6410767 |
acaaaagtggactcaatcacatgatgatg |
6410795 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 167 - 229
Target Start/End: Original strand, 680971 - 681033
Alignment:
| Q |
167 |
gaaaggctttagcatgggtcgacaatattcccaaacaaaagtggactcaatcacatgatgatg |
229 |
Q |
| |
|
||||||||||||||||||| ||||| ||||||||| ||||| |||||||||| |||||||||| |
|
|
| T |
680971 |
gaaaggctttagcatgggttgacaacattcccaaagaaaagcggactcaatcgcatgatgatg |
681033 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0170 (Bit Score: 199; Significance: 1e-108; HSPs: 1)
Name: scaffold0170
Description:
Target: scaffold0170; HSP #1
Raw Score: 199; E-Value: 1e-108
Query Start/End: Original strand, 1 - 229
Target Start/End: Complemental strand, 28395 - 28170
Alignment:
| Q |
1 |
aaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaaca |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
28395 |
aaagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacat---atttgtttaaaaagacacatctaacttttttcaaaaca |
28299 |
T |
|
| Q |
101 |
atgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgttgttgcagacagaaaggctttagcatgggtcgacaatattcccaa |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||| ||||||||||||||||||||||||||||| |
|
|
| T |
28298 |
atgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgctgttgcagaccgaaatgctttagcatgggtcgacaatattcccaa |
28199 |
T |
|
| Q |
201 |
acaaaagtggactcaatcacatgatgatg |
229 |
Q |
| |
|
||||||||||||||||||||||||||||| |
|
|
| T |
28198 |
acaaaagtggactcaatcacatgatgatg |
28170 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0504 (Bit Score: 192; Significance: 1e-104; HSPs: 1)
Name: scaffold0504
Description:
Target: scaffold0504; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 2 - 229
Target Start/End: Complemental strand, 3171 - 2944
Alignment:
| Q |
2 |
aagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaacaa |
101 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| ||| ||| |||||||||||||||||| |
|
|
| T |
3171 |
aagaagaaagttgaaggcatgggtaaaaatcatatctctttcctcgtaaattcgacatattatttgtttaaaaagacccatttaacttttttcaaaacaa |
3072 |
T |
|
| Q |
102 |
tgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgttgttgcagacagaaaggctttagcatgggtcgacaatattcccaaa |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||||||||||||| |||| |
|
|
| T |
3071 |
tgcaggttacgccatgaacatccctacattcgaatactaccgttttgaaattgttgttgcagaccgaaaggctttagcatgggtcgacaatattcacaaa |
2972 |
T |
|
| Q |
202 |
caaaagtggactcaatcacatgatgatg |
229 |
Q |
| |
|
|||||||||||||||||||||||||||| |
|
|
| T |
2971 |
caaaagtggactcaatcacatgatgatg |
2944 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 192; Significance: 1e-104; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 192; E-Value: 1e-104
Query Start/End: Original strand, 2 - 229
Target Start/End: Complemental strand, 26522852 - 26522625
Alignment:
| Q |
2 |
aagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaacaa |
101 |
Q |
| |
|
||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| | |||||| |
|
|
| T |
26522852 |
aagaagaaagttgaaggcatgggtaaaaatcatatctctttccacgtaaattcgacatattatttgtttaaaaagacacatctaactttttcccaaacaa |
26522753 |
T |
|
| Q |
102 |
tgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgttgttgcagacagaaaggctttagcatgggtcgacaatattcccaaa |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
26522752 |
tgcaggttacgccatgaacatccctacattcgaatattaccgttctgaaattgctgttgcagaccgaaaggctttagcatgggtcgacaatattcccaaa |
26522653 |
T |
|
| Q |
202 |
caaaagtggactcaatcacatgatgatg |
229 |
Q |
| |
|
||||||||||||||||||||||| |||| |
|
|
| T |
26522652 |
caaaagtggactcaatcacatgacgatg |
26522625 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 158; E-Value: 3e-84
Query Start/End: Original strand, 2 - 229
Target Start/End: Complemental strand, 52608079 - 52607850
Alignment:
| Q |
2 |
aagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacatttt-atttgtttaaaatgacacatctaacttttttcaaaaca |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||| |||| |||| | ||||||||| ||| | | |||||||||||| ||||||||||||||||||||||||| |
|
|
| T |
52608079 |
aagaagaaagttgaaggcatgggtaaaaatcttatccctttactcgtaaattcaacaatatgatttgtttaaaaagacacatctaacttttttcaaaaca |
52607980 |
T |
|
| Q |
101 |
at-gcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgttgttgcagacagaaaggctttagcatgggtcgacaatattccca |
199 |
Q |
| |
|
|||||||||||||||||||||| ||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| |
|
|
| T |
52607979 |
tccgcaggttacgccatgaacatccttacattcgaatactatcgttctgaaattgttgttgcagaccgaaaggctttagcatgggtcgacaatattccca |
52607880 |
T |
|
| Q |
200 |
aacaaaagtggactcaatcacatgatgatg |
229 |
Q |
| |
|
|||||||||||||||||||||||||||||| |
|
|
| T |
52607879 |
aacaaaagtggactcaatcacatgatgatg |
52607850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 133; E-Value: 3e-69
Query Start/End: Original strand, 2 - 229
Target Start/End: Complemental strand, 39197029 - 39196801
Alignment:
| Q |
2 |
aagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaa-atgacacatctaacttttttcaaaaca |
100 |
Q |
| |
|
||||||||||||||| ||||| |||||||| |||||||| ||| |||| |||||||| ||||||||||||| | ||||||||||| ||||||||||||| |
|
|
| T |
39197029 |
aagaagaaagttgaaggcatgagtaaaaattatatctctatccttgtaatttcgacatattatttgtttaaagaagacacatctaaattttttcaaaaca |
39196930 |
T |
|
| Q |
101 |
atgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgttgttgcagacagaaaggctttagcatgggtcgacaatattcccaa |
200 |
Q |
| |
|
||||||||||||||||||||||||| ||||||||||||||||| | |||||| | ||| | ||| ||||||||||||||||||||||||| |||| ||| |
|
|
| T |
39196929 |
atgcaggttacgccatgaacatcccaacattcgaatactaccgctttgaaatcgctgtcacggaccgaaaggctttagcatgggtcgacaacattctcaa |
39196830 |
T |
|
| Q |
201 |
acaaaagtggactcaatcacatgatgatg |
229 |
Q |
| |
|
| ||||||||||||||||||||||||||| |
|
|
| T |
39196829 |
agaaaagtggactcaatcacatgatgatg |
39196801 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 189; Significance: 1e-102; HSPs: 4)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 2 - 229
Target Start/End: Complemental strand, 13048619 - 13048392
Alignment:
| Q |
2 |
aagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaactt-ttttcaaaaca |
100 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||| ||||||||||| |
|
|
| T |
13048619 |
aagaagaaagttgaaggcatgggtaaaaatcatatctctttcctcgtaaattcgacatattatttgtttaaaaagacacatctaactttttttcaaaaca |
13048520 |
T |
|
| Q |
101 |
atgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgttgttgcagacagaaaggctttagcatgggtcgacaatattcccaa |
200 |
Q |
| |
|
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| |
|
|
| T |
13048519 |
atgcaggttacgccatgagcatccctacattcgaatactaccgttctgaaattgttgttgcagac-gaaaggctttagcatgggtcgacaatattcccaa |
13048421 |
T |
|
| Q |
201 |
acaaaagtggactcaatcacatgatgatg |
229 |
Q |
| |
|
||||||| ||||||||||||||||||||| |
|
|
| T |
13048420 |
acaaaagcggactcaatcacatgatgatg |
13048392 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 186; E-Value: 1e-101
Query Start/End: Original strand, 2 - 229
Target Start/End: Complemental strand, 26335494 - 26335270
Alignment:
| Q |
2 |
aagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaacaa |
101 |
Q |
| |
|
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||| |
|
|
| T |
26335494 |
aagaagaaagttgaaggcatgggtaaaaatcatatctctttccacgtaaattcgacag---atttgtttaaaacgacacatctaacttttttcaaaacaa |
26335398 |
T |
|
| Q |
102 |
tgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgttgttgcagacagaaaggctttagcatgggtcgacaatattcccaaa |
201 |
Q |
| |
|
| ||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||||||||||||||||||||||||||||||||| |
|
|
| T |
26335397 |
tacaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgatgttgcagaccgaaaggctttagcatgggtcgacaatattcccaaa |
26335298 |
T |
|
| Q |
202 |
caaaagtggactcaatcacatgatgatg |
229 |
Q |
| |
|
|||||||||| ||||||||||||||||| |
|
|
| T |
26335297 |
caaaagtggaatcaatcacatgatgatg |
26335270 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #3
Raw Score: 180; E-Value: 2e-97
Query Start/End: Original strand, 2 - 229
Target Start/End: Complemental strand, 22023943 - 22023716
Alignment:
| Q |
2 |
aagaagaaagttgaatgcatgggtaaaaatcatatctctttccacgtaaattcgacattttatttgtttaaaatgacacatctaacttttttcaaaacaa |
101 |
Q |
| |
|
||||||||||||||| ||||||||||||| |||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| | |||||| |
|
|
| T |
22023943 |
aagaagaaagttgaaggcatgggtaaaaaacatatctctttccacgtaaattcgacatattatttgtttaaaaagacacatctaactttttcctaaacaa |
22023844 |
T |
|
| Q |
102 |
tgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaattgttgttgcagacagaaaggctttagcatgggtcgacaatattcccaaa |
201 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||| ||||| |||| |||||||||||||||||||||| |||||||||||| |
|
|
| T |
22023843 |
tgcaggttacgccatgaacatccctacattcgaatattaccgttctgaaattgctgttgtagaccgaaaggctttagcatgggtcgaaaatattcccaaa |
22023744 |
T |
|
| Q |
202 |
caaaagtggactcaatcacatgatgatg |
229 |
Q |
| |
|
||||||||||||||||||||||| |||| |
|
|
| T |
22023743 |
caaaagtggactcaatcacatgacgatg |
22023716 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #4
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 52 - 222
Target Start/End: Complemental strand, 34677752 - 34677582
Alignment:
| Q |
52 |
ttcgacattttatttgtttaaaatgacacatctaacttttttcaaaacaatgcaggttacgccatgaacatccctacattcgaatactaccgttctgaaa |
151 |
Q |
| |
|
|||| ||| |||||| ||||||| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34677752 |
ttcgtcatattatttttttaaaaagacacatctaacttttttcaaaacaatgcaggttaggccatgaacatccctacattcgaatactaccgttctgaaa |
34677653 |
T |
|
| Q |
152 |
ttgttgttgcagacagaaaggctttagcatgggtcgacaatattcccaaacaaaagtggactcaatcacat |
222 |
Q |
| |
|
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34677652 |
ttgttgttgcagaccgaaaggctttagcatgggtcgacaatattcccaaacaaaagtggactcaatcacat |
34677582 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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