View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6422_high_2 (Length: 349)
Name: NF6422_high_2
Description: NF6422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6422_high_2 |
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Alignment Details
Target: chr8 (Bit Score: 232; Significance: 1e-128; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 232; E-Value: 1e-128
Query Start/End: Original strand, 18 - 315
Target Start/End: Original strand, 13161275 - 13161576
Alignment:
| Q |
18 |
cttttcagttcatgtataatggatggtattggataatgatttgcatatttgataaatagttcatataggctgaaaaagtagtcccttttgcgaataactt |
117 |
Q |
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| T |
13161275 |
cttttcagttcatgtataatggatggtattggataatgatttgcatatttgataaatagttcatataggctgaaaaagtagtcccttttgcgaataactt |
13161374 |
T |
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| Q |
118 |
tgcaattgtaacttctata-tttatttatatttcctacatattttttaacctcaaatagaattatcaa---cnnnnnnnnatgcatacccaaagtgacat |
213 |
Q |
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| T |
13161375 |
tgcaattgtaacttctatagaatatttatatttcctacatattttttaacctcaaatagaattataaatttattttttttatgcatacccaaagtgacat |
13161474 |
T |
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| Q |
214 |
tgtgatgaaatatagttaagtgcatgtataaaactcttcaaattttgtggaaggttgtagtcttgtagatatagcattgtactaagcctctatttgtgtc |
313 |
Q |
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| T |
13161475 |
tgtgatgaaatatagttaagtgcatatataaaattcttcaaattttgtggaaggttgtagtcttgtagatatagcattgtactaagcctctatttgtgtc |
13161574 |
T |
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| Q |
314 |
ac |
315 |
Q |
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| T |
13161575 |
ac |
13161576 |
T |
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