View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6422_high_7 (Length: 251)
Name: NF6422_high_7
Description: NF6422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6422_high_7 |
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Alignment Details
Target: chr5 (Bit Score: 102; Significance: 9e-51; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 102; E-Value: 9e-51
Query Start/End: Original strand, 1 - 113
Target Start/End: Complemental strand, 39631144 - 39631034
Alignment:
| Q |
1 |
agagaatatgctaaataactccaaaatcggaggaattactacaagggtctatatgcacatttcatatatttaatttttgaacgtgtcattttctcttaat |
100 |
Q |
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| T |
39631144 |
agagaatatgctaaataactccaaaatcggaggaattactacaagggtctatatgcacatttcatatatttaa--tttgaacgtgtcattttctcttaat |
39631047 |
T |
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| Q |
101 |
tttctttgtttat |
113 |
Q |
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| T |
39631046 |
tttctttgtttat |
39631034 |
T |
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Target: chr5; HSP #2
Raw Score: 70; E-Value: 1e-31
Query Start/End: Original strand, 159 - 232
Target Start/End: Complemental strand, 39630987 - 39630914
Alignment:
| Q |
159 |
gaccgactctcgtggtcaagtctggaaagaaacttcttttcccttggaccaaaataatatatataaagtctaca |
232 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |
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| T |
39630987 |
gaccgactctcgtggtcaagtctggaaagaaacttcttttcccttggaccaaaataatacatataaagtctaca |
39630914 |
T |
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