View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF6422_high_9 (Length: 237)
Name: NF6422_high_9
Description: NF6422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6422_high_9 |
 | |
|
| [»] chr3 (2 HSPs) |
| |
|
Alignment Details
Target: chr3 (Bit Score: 182; Significance: 2e-98; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 12 - 237
Target Start/End: Complemental strand, 26017679 - 26017454
Alignment:
| Q |
12 |
atcatcatcacttacctgagtttcaatccgttccttttcgtctttcctcgaaggtttgtgatcagatgttaaggcctcagcaagacctcctctacttatg |
111 |
Q |
| |
|
||||| |||| |||||||||||||||| ||||| |||||||||||||| |||||||||||||| || |||||||||||||||| |||||||||||| ||| |
|
|
| T |
26017679 |
atcataatcaattacctgagtttcaattcgttctttttcgtctttccttgaaggtttgtgatccgacgttaaggcctcagcaacacctcctctactgatg |
26017580 |
T |
|
| Q |
112 |
acagcgcgacaatcgcctgcattggacacaacaaggttaccattcctaataaatgctgttacgcagcaagagccaccattaagatcctcttttaagaaat |
211 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||| |
|
|
| T |
26017579 |
acagcgcgacaatcgcctgcattggacacaacaaggttaccattcctaataaatgctgttacacagcaagagccaccattaagatcttcttttaagaaat |
26017480 |
T |
|
| Q |
212 |
ctgaatctgttttgaggtaaccatgc |
237 |
Q |
| |
|
|||||||||||||||||||||||||| |
|
|
| T |
26017479 |
ctgaatctgttttgaggtaaccatgc |
26017454 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 130; E-Value: 2e-67
Query Start/End: Original strand, 23 - 236
Target Start/End: Complemental strand, 26002856 - 26002643
Alignment:
| Q |
23 |
ttacctgagtttcaatccgttccttttcgtctttcctcgaaggtttgtgatcagatgttaaggcctcagcaagacctcctctacttatgacagcgcgaca |
122 |
Q |
| |
|
|||||||||| ||||||||||| ||||||||||||||||||||||||||||| ||||||||||| |||||| |||||| || |||||||| ||||| |
|
|
| T |
26002856 |
ttacctgagtctcaatccgttctttttcgtctttcctcgaaggtttgtgatctgatgttaaggcttcagcagcacctccatggctgatgacagcacgaca |
26002757 |
T |
|
| Q |
123 |
atcgcctgcattggacacaacaaggttaccattcctaataaatgctgttacgcagcaagagccaccattaagatcctcttttaagaaatctgaatctgtt |
222 |
Q |
| |
|
||| || |||||||||| ||||||||| ||||| ||||| ||||||||||| |||||||| |||||||||||||| |||||||||||||||||||||||| |
|
|
| T |
26002756 |
atcaccggcattggacataacaaggttgccatttctaattaatgctgttacacagcaagaaccaccattaagatcttcttttaagaaatctgaatctgtt |
26002657 |
T |
|
| Q |
223 |
ttgaggtaaccatg |
236 |
Q |
| |
|
|||||||||||||| |
|
|
| T |
26002656 |
ttgaggtaaccatg |
26002643 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 59; Significance: 4e-25; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 59; E-Value: 4e-25
Query Start/End: Original strand, 43 - 233
Target Start/End: Complemental strand, 30374166 - 30373976
Alignment:
| Q |
43 |
tccttttcgtctttcctcgaaggtttgtgatcagatgttaaggcctcagcaagacctcctctacttatgacagcgcgacaatcgcctgcattggacacaa |
142 |
Q |
| |
|
||||||||||||| ||| ||||| |||||||||||||| |||||||||| ||||||||||| || ||||| || ||||| || ||||| ||||||| |
|
|
| T |
30374166 |
tccttttcgtcttcccttgaaggacggtgatcagatgttagtgcctcagcaacccctcctctactaataacagcacggcaatcaccagcattagacacaa |
30374067 |
T |
|
| Q |
143 |
caaggttaccattcctaataaatgctgttacgcagcaagagccaccattaagatcctcttttaagaaatctgaatctgttttgaggtaacc |
233 |
Q |
| |
|
| | ||||||||||||||| |||||||| || || ||||| ||||||| ||||| | ||| | ||| || ||||| || ||||||||||| |
|
|
| T |
30374066 |
ctaagttaccattcctaatgaatgctgtcacacaacaagaaccaccatgtagatcttttttcatgaactcagaatcggtattgaggtaacc |
30373976 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University