View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6422_low_11 (Length: 237)
Name: NF6422_low_11
Description: NF6422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6422_low_11 |
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Alignment Details
Target: chr1 (Bit Score: 205; Significance: 1e-112; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 205; E-Value: 1e-112
Query Start/End: Original strand, 15 - 223
Target Start/End: Complemental strand, 35354534 - 35354326
Alignment:
| Q |
15 |
aatggtttacattgagtaattagtttgaaatgtgatttccagagactatatcatcttggagcacgtagggttctggtgtcaggaacaggtccaatgggtt |
114 |
Q |
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| T |
35354534 |
aatggtttacattgagtaattagtttgaaatgtgatttccagagactatatcatcttggagcacgtagggttctggtgtcaggaacaggtccaatgggtt |
35354435 |
T |
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| Q |
115 |
gtgctccagcagcattagctataggaggcacagatggtgaatgtgcacctgagttacagcttgctacgtccttatacaatccaaaacttgttcagttgat |
214 |
Q |
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| T |
35354434 |
gtgctccagcagcattagctataggaggcacagatggtgaatgtgcacctgagttacagcttgctgcgtccttatacaatccaaaacttgttcagttgat |
35354335 |
T |
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| Q |
215 |
cacagaact |
223 |
Q |
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| T |
35354334 |
cacagaact |
35354326 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 44; Significance: 4e-16; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 44; E-Value: 4e-16
Query Start/End: Original strand, 54 - 133
Target Start/End: Original strand, 48092767 - 48092846
Alignment:
| Q |
54 |
cagagactatatcatcttggagcacgtagggttctggtgtcaggaacaggtccaatgggttgtgctccagcagcattagc |
133 |
Q |
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| T |
48092767 |
cagagactatacgatcttggagcacgtagggtgatagtgacaggaacaggtccaattggttgtgttccagcagaattagc |
48092846 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000003
Query Start/End: Original strand, 72 - 136
Target Start/End: Original strand, 48084802 - 48084866
Alignment:
| Q |
72 |
ggagcacgtagggttctggtgtcaggaacaggtccaatgggttgtgctccagcagcattagctat |
136 |
Q |
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| T |
48084802 |
ggagctcgtagggttcttgtaacgggaacaggaccaatggggtgtgcaccagcagaattagctat |
48084866 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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