View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6422_low_3 (Length: 319)
Name: NF6422_low_3
Description: NF6422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6422_low_3 |
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Alignment Details
Target: chr5 (Bit Score: 189; Significance: 1e-102; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 6 - 302
Target Start/End: Original strand, 39631184 - 39631478
Alignment:
| Q |
6 |
aagaatatgaaccaaaaacttcacaagattctctcctagagccaagtcaagcttcaaatcccactatccaccaacatataataaaagataacatttctct |
105 |
Q |
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| T |
39631184 |
aagaatatgaaccaaaaacttcacaagattctctcctagagccaagtcaagcttcaaatcccactatccactaacatataataaaagataacatttctct |
39631283 |
T |
|
| Q |
106 |
tataaccctaaaaaataattagttcac-atgcaatctgagcgtnnnnnnntttacattgaaccgttatattatgataatgtataactttaattttaacta |
204 |
Q |
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||||||||||||||||||||| ||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
39631284 |
tataaccctaaaaaataattaattcacaatgcaatctgagcgtaaaaaaatttacattgaaccgttatattatgataatgtataactttaattttaacta |
39631383 |
T |
|
| Q |
205 |
ttaatannnnnnnaacaaaaataagagcctgtaatattnnnnnnngaattacacataatatgattagttgtatattgtcgatattacacgatgttttg |
302 |
Q |
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|||||| ||||||||||||||||| |||||| |||| |||| ||||||||||||||| ||||||||||||||||||||||||| |
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| T |
39631384 |
ttaatatttttctaacaaaaataagagcctataatatcaaaaaaagaatcacac---atatgattagttgtaaattgtcgatattacacgatgttttg |
39631478 |
T |
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