View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF6422_low_5 (Length: 308)

Name: NF6422_low_5
Description: NF6422
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF6422_low_5
NF6422_low_5
[»] chr6 (14 HSPs)
chr6 (12-290)||(6505523-6505801)
chr6 (40-286)||(6526419-6526662)
chr6 (12-288)||(6515961-6516237)
chr6 (12-287)||(13035602-13035874)
chr6 (208-288)||(6465378-6465458)
chr6 (102-277)||(6520514-6520695)
chr6 (210-287)||(6473098-6473175)
chr6 (210-287)||(6528239-6528316)
chr6 (120-284)||(6496722-6496886)
chr6 (120-284)||(6461786-6461950)
chr6 (222-286)||(6523440-6523504)
chr6 (12-173)||(6472903-6473061)
chr6 (12-91)||(1841749-1841828)
chr6 (211-288)||(6457418-6457495)
[»] chr7 (1 HSPs)
chr7 (102-288)||(9665246-9665438)
[»] chr4 (1 HSPs)
chr4 (102-288)||(13536270-13536462)
[»] chr1 (3 HSPs)
chr1 (222-273)||(35231500-35231551)
chr1 (222-285)||(35243140-35243203)
chr1 (112-140)||(35231399-35231427)


Alignment Details
Target: chr6 (Bit Score: 231; Significance: 1e-127; HSPs: 14)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 231; E-Value: 1e-127
Query Start/End: Original strand, 12 - 290
Target Start/End: Complemental strand, 6505801 - 6505523
Alignment:
Q  12 aagcaaaggtgtaaaagacgaatcacgcgatgaaattgtttcatcactttctaaagatgttgaagatttaaactcatctgcaacaaaacaaacaacatcg 111  Q
    |||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||    
T  6505801 aagcaaaggtgtaaaagacgaatcacgcaatgaaattgtttcatcactttctaaagatgttgaaggtttaaactcatctgcaacaaaacaaacaaaatcg 6505702  T
Q  112 tcttatttttatggaaaattgattgcaagagcagctaggcttgcattggtagcggaagaggttttcttctttgaagccattgaaaaggttagaagttttt 211  Q
    |||||||||||||||||||| ||||||||||||||||||||||||||| |||| |||||||||||||||||||| || |||||||| || ||||  ||||    
T  6505701 tcttatttttatggaaaattaattgcaagagcagctaggcttgcattgatagctgaagaggttttcttctttgatgctattgaaaaagtaagaaactttt 6505602  T
Q  212 tgaaggaaaccattgagccttggcttgatggaacttttaatggaaatggatttctatatgataaaaaatggggaggact 290  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  6505601 tgaaggaaaccattgagccttggcttgatggaacttttaatggaaatggatttctatatgataaaaaatggggaggact 6505523  T

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Target: chr6; HSP #2
Raw Score: 117; E-Value: 1e-59
Query Start/End: Original strand, 40 - 286
Target Start/End: Complemental strand, 6526662 - 6526419
Alignment:
Q  40 gatgaaattgtttcatcactttctaaagatgttgaagatttaaactcatctgcaacaaaacaaacaacatcgtcttatttttatggaaaattgattgcaa 139  Q
    ||||||||||||||| |||||| ||| ||||||||||   | || |||||   ||||| | |||||| ||| ||||||||||||||||||||||||||||    
T  6526662 gatgaaattgtttcagcactttgtaaggatgttgaaggactgaattcatc---aacaataaaaacaaaatcatcttatttttatggaaaattgattgcaa 6526566  T
Q  140 gagcagctaggcttgcattggtagcggaagaggttttcttctttgaagccattgaaaaggttagaagttttttgaaggaaaccattgagccttggcttga 239  Q
    |||| || || ||||||||| |||||||||||||||  ||| |||| |  |||  ||| |||||||  | ||||||||||||||||||||||||||||||    
T  6526565 gagctgcaagacttgcattgatagcggaagaggtttgtttccttgatgtgattccaaaagttagaaagtatttgaaggaaaccattgagccttggcttga 6526466  T
Q  240 tggaacttttaatggaaatggatttctatatgataaaaaatggggag 286  Q
    ||||||||||||||||||||||||||| |||||||||||||||||||    
T  6526465 tggaacttttaatggaaatggatttctttatgataaaaaatggggag 6526419  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 12 - 288
Target Start/End: Original strand, 6515961 - 6516237
Alignment:
Q  12 aagcaaaggtgtaaaagacgaatcacgcgatgaaattgtttcatcactttctaaagatgttgaagatttaaactcatctgcaacaaaacaaacaacatcg 111  Q
    |||||||||| ||||||| |||||||  |||||||||||||| || ||||  ||||||||||||| |||||| ||||| |||| || |  ||  || ||     
T  6515961 aagcaaaggtataaaagaagaatcacatgatgaaattgtttcgtcgcttttaaaagatgttgaaggtttaaattcatcagcaataacatcaattacttca 6516060  T
Q  112 tcttatttttatggaaaattgattgcaagagcagctaggcttgcattggtagcggaagaggttttcttctttgaagccattgaaaaggttagaagttttt 211  Q
    ||||| || |||||| ||||||||||||||||||| ||| | |||||| |||| |||||  |||| ||| |||| || ||| |||| || ||||| ||||    
T  6516061 tcttacttctatggacaattgattgcaagagcagcaaggttagcattgatagctgaagaattttttttcgttgacgctattcaaaaagtcagaagctttt 6516160  T
Q  212 tgaaggaaaccattgagccttggcttgatggaacttttaatggaaatggatttctatatgataaaaaatggggagga 288  Q
    |||||||||| ||||| || |||||||||||||||||||| |||||||||||||| ||||| |||||||||||||||    
T  6516161 tgaaggaaacaattgaaccatggcttgatggaacttttaacggaaatggatttctgtatgacaaaaaatggggagga 6516237  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 71; E-Value: 4e-32
Query Start/End: Original strand, 12 - 287
Target Start/End: Original strand, 13035602 - 13035874
Alignment:
Q  12 aagcaaaggtgtaaaagacgaatcacgcgatgaaattgtttcatcactttctaaagatgttgaagatttaaactcatctgcaacaaaacaaacaacatcg 111  Q
    |||||||||||||||||| |||||||  ||  ||||||||||| | ||||| ||||||||||||| | |||| |||||  | | || |   || |||||     
T  13035602 aagcaaaggtgtaaaagaagaatcacatgacaaaattgtttcagctctttcgaaagatgttgaaggtctaaagtcatcaccgataaca---acgacatca 13035698  T
Q  112 tcttatttttatggaaaattgattgcaagagcagctaggcttgcattggtagcggaagaggttttcttctttgaagccattgaaaaggtta-gaagtttt 210  Q
    ||||| ||||||||||||||||| |||||||| || ||| | |||||| || | ||||||||    | | |||| || |||  ||  || | |||||  |    
T  13035699 tcttacttttatggaaaattgatagcaagagctgcaaggttagcattgataactgaagaggtgaattaccttgatgcaattccaattgtgaagaagtact 13035798  T
Q  211 ttgaaggaaaccattgagccttggcttgatggaacttttaatggaaatggatttctatatgataaaaaatggggagg 287  Q
    | ||||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||    
T  13035799 t-gaaggaatccattgagccttggcttgatggaacttttaatggaaatggatttctctatgataaaaaatggggagg 13035874  T

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Target: chr6; HSP #5
Raw Score: 65; E-Value: 1e-28
Query Start/End: Original strand, 208 - 288
Target Start/End: Complemental strand, 6465458 - 6465378
Alignment:
Q  208 tttttgaaggaaaccattgagccttggcttgatggaacttttaatggaaatggatttctatatgataaaaaatggggagga 288  Q
    |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||||||  |||||||||||||    
T  6465458 tttttgaaggaaactattgagccttggcttgatggaacttttaatggaaatggatttctctatgatggaaaatggggagga 6465378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 102 - 277
Target Start/End: Original strand, 6520514 - 6520695
Alignment:
Q  102 aacaacatcgtcttatttttatggaaaattgattgcaagagcagctaggcttgcattggtagcggaagaggttttcttctttgaagccattgaaaaggtt 201  Q
    ||||||||||||||||| ||||||||| |||||||| ||||| || ||| | ||| |  |||| |||||||||||| |||||||    |||  |||||||    
T  6520514 aacaacatcgtcttattcttatggaaagttgattgctagagctgcaaggttagcaataatagctgaagaggttttcgtctttgatttgattccaaaggtt 6520613  T
Q  202 agaagt------tttttgaaggaaaccattgagccttggcttgatggaacttttaatggaaatggatttctatatgataaaa 277  Q
    |  | |      || ||||||||||| |||||||||||||||||||||||||||| || |||||| ||||||||||||||||    
T  6520614 aagattaagatgttcttgaaggaaactattgagccttggcttgatggaacttttagtgaaaatggttttctatatgataaaa 6520695  T

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Target: chr6; HSP #7
Raw Score: 54; E-Value: 5e-22
Query Start/End: Original strand, 210 - 287
Target Start/End: Original strand, 6473098 - 6473175
Alignment:
Q  210 tttgaaggaaaccattgagccttggcttgatggaacttttaatggaaatggatttctatatgataaaaaatggggagg 287  Q
    |||||||||| |||  ||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||||||    
T  6473098 tttgaaggaatccaccgagccttggctcgatggaacatttaatggaaatggatttctctatgataaaaaatggggagg 6473175  T

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Target: chr6; HSP #8
Raw Score: 50; E-Value: 1e-19
Query Start/End: Original strand, 210 - 287
Target Start/End: Complemental strand, 6528316 - 6528239
Alignment:
Q  210 tttgaaggaaaccattgagccttggcttgatggaacttttaatggaaatggatttctatatgataaaaaatggggagg 287  Q
    ||||||||| |  |||||||||||||||||||||||||| || || ||||||||||| ||||||||||||||||||||    
T  6528316 tttgaaggagatgattgagccttggcttgatggaactttcaaaggtaatggatttctctatgataaaaaatggggagg 6528239  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 46; E-Value: 3e-17
Query Start/End: Original strand, 120 - 284
Target Start/End: Complemental strand, 6496886 - 6496722
Alignment:
Q  120 ttatggaaaattgattgcaagagcagctaggcttgcattggtagcggaagaggttttcttctttgaagccattgaaaaggtta-gaagttttttgaagga 218  Q
    |||||| |||||||||| ||| || || ||| |||||||| |||| ||||||||||  | ||| || |  |||  |||||||| ||||||||| ||| ||    
T  6496886 ttatggtaaattgattggaagggcggcgaggtttgcattgatagccgaagaggtttcatacttagatgtgattccaaaggttaagaagttttt-gaaaga 6496788  T
Q  219 aaccattgagccttggcttgatggaacttttaatggaaatggatttctatatgataaaaaatgggg 284  Q
    |||||||||||||||| | ||||||||||| ||||| |||||||||||| | ||| | ||||||||    
T  6496787 aaccattgagccttggttagatggaactttaaatgggaatggatttctacaagatgataaatgggg 6496722  T

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Target: chr6; HSP #10
Raw Score: 42; E-Value: 0.000000000000007
Query Start/End: Original strand, 120 - 284
Target Start/End: Original strand, 6461786 - 6461950
Alignment:
Q  120 ttatggaaaattgattgcaagagcagctaggcttgcattggtagcggaagaggttttcttctttgaagccattgaaaaggtta-gaagttttttgaagga 218  Q
    |||||| |||||||||| ||| || || ||| |||||||| |||| ||||||||||  | ||| || |  |||  |||||||| |||||||||  ||| |    
T  6461786 ttatggtaaattgattggaagggcggcgaggtttgcattgatagctgaagaggtttcttacttagatgtgattccaaaggttaagaagtttttaaaag-a 6461884  T
Q  219 aaccattgagccttggcttgatggaacttttaatggaaatggatttctatatgataaaaaatgggg 284  Q
    |||||||||||||||| | ||||||||||| ||||| |||||||||||| | ||| | ||||||||    
T  6461885 aaccattgagccttggttagatggaactttaaatgggaatggatttctacaagatgataaatgggg 6461950  T

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Target: chr6; HSP #11
Raw Score: 41; E-Value: 0.00000000000003
Query Start/End: Original strand, 222 - 286
Target Start/End: Complemental strand, 6523504 - 6523440
Alignment:
Q  222 cattgagccttggcttgatggaacttttaatggaaatggatttctatatgataaaaaatggggag 286  Q
    ||||||||||||||||||||||||||| ||   ||||||||||||||||||| | ||||||||||    
T  6523504 cattgagccttggcttgatggaactttcaaataaaatggatttctatatgatcagaaatggggag 6523440  T

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Target: chr6; HSP #12
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 12 - 173
Target Start/End: Original strand, 6472903 - 6473061
Alignment:
Q  12 aagcaaaggtgtaaaagacgaatcacgcgatgaaattgtttcatcactttctaaagatgttgaagatttaaactcatctgcaacaaaacaaacaacatcg 111  Q
    |||||||||||||||||| |||||||  || |||||||||||| | ||||| |||||||||||   | |||| ||||   || | | |  |||| ||||     
T  6472903 aagcaaaggtgtaaaagaagaatcacatgacgaaattgtttcagctctttcaaaagatgttgagagtctaaagtcat---caccgataacaacagcatca 6472999  T
Q  112 tcttatttttatggaaaattgattgcaagagcagctaggcttgcattggtagcggaagaggt 173  Q
    ||||| ||||||||||||||||| ||||| || || ||| | |||||| |||| ||||||||    
T  6473000 tcttacttttatggaaaattgatagcaagggctgcgaggttagcattgatagccgaagaggt 6473061  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 12 - 91
Target Start/End: Original strand, 1841749 - 1841828
Alignment:
Q  12 aagcaaaggtgtaaaagacgaatcacgcgatgaaattgtttcatcactttctaaagatgttgaagatttaaactcatctg 91  Q
    |||||||||||||||||| ||||  |  ||||||||||||||| | ||||  ||| ||||||||| ||| ||||||||||    
T  1841749 aagcaaaggtgtaaaagaagaatttcatgatgaaattgtttcagctcttttgaaatatgttgaaggtttgaactcatctg 1841828  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 211 - 288
Target Start/End: Complemental strand, 6457495 - 6457418
Alignment:
Q  211 ttgaaggaaaccattgagccttggcttgatggaacttttaatggaaatggatttctatatgataaaaaatggggagga 288  Q
    ||||||||||| || ||||| ||| |  ||||||||||||| | |||||| ||||| ||||||  |||||||||||||    
T  6457495 ttgaaggaaacgatcgagccatggttgaatggaacttttaacgaaaatggttttctttatgatggaaaatggggagga 6457418  T

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Target: chr7 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 102 - 288
Target Start/End: Original strand, 9665246 - 9665438
Alignment:
Q  102 aacaacatcgtcttatttttatggaaaattgattgcaagagcagctaggcttgcattggtagcggaagaggttttcttctttgaagccattgaaaaggtt 201  Q
    ||||||||| || || |||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||| ||||||||     ||  ||| |||    
T  9665246 aacaacatcttcatacttttatggaaaattgattgcaagagcagctaggcttgcattgatagctgaagacgtttttttctttgatatggttccaaatgtt 9665345  T
Q  202 a-------gaagttttttgaaggaaaccattgagccttggcttgatggaacttttaatggaaatggatttctatatgataaaaaatggggagga 288  Q
    |       ||||||||| ||| ||||| ||||| || ||| ||||||||||||| || | |||||||||||| |||||| | ||||||||||||    
T  9665346 aagattaagaagttttt-gaaagaaactattgaaccgtggtttgatggaactttcaaagaaaatggatttctgtatgatcagaaatggggagga 9665438  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 56; Significance: 3e-23; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 56; E-Value: 3e-23
Query Start/End: Original strand, 102 - 288
Target Start/End: Original strand, 13536270 - 13536462
Alignment:
Q  102 aacaacatcgtcttatttttatggaaaattgattgcaagagcagctaggcttgcattggtagcggaagaggttttcttctttgaagccattgaaaaggtt 201  Q
    ||||||||| || || |||||||||||||||||||||||||||||||||||||||||| |||| ||||| ||||| ||||||||     ||  ||| |||    
T  13536270 aacaacatcttcatacttttatggaaaattgattgcaagagcagctaggcttgcattgatagctgaagacgtttttttctttgatatggttccaaatgtt 13536369  T
Q  202 a-------gaagttttttgaaggaaaccattgagccttggcttgatggaacttttaatggaaatggatttctatatgataaaaaatggggagga 288  Q
    |       ||||||||| ||| ||||| ||||| || ||| ||||||||||||| || | |||||||||||| |||||| | ||||||||||||    
T  13536370 aagattaagaagttttt-gaaagaaactattgaaccgtggtttgatggaactttcaaagaaaatggatttctgtatgatcagaaatggggagga 13536462  T

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Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 273
Target Start/End: Original strand, 35231500 - 35231551
Alignment:
Q  222 cattgagccttggcttgatggaacttttaatggaaatggatttctatatgat 273  Q
    |||||||||||||||||||||| || | || | |||||||||||||||||||    
T  35231500 cattgagccttggcttgatggagctatcaaagaaaatggatttctatatgat 35231551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 222 - 285
Target Start/End: Original strand, 35243140 - 35243203
Alignment:
Q  222 cattgagccttggcttgatggaacttttaatggaaatggatttctatatgataaaaaatgggga 285  Q
    |||||||| |||||||||||||||||| || | ||||| |||| |||||||| || ||||||||    
T  35243140 cattgagctttggcttgatggaactttcaaagaaaatgaatttgtatatgatcaagaatgggga 35243203  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 112 - 140
Target Start/End: Original strand, 35231399 - 35231427
Alignment:
Q  112 tcttatttttatggaaaattgattgcaag 140  Q
    |||||||||||||||||||||||||||||    
T  35231399 tcttatttttatggaaaattgattgcaag 35231427  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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