View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF6423_high_1 (Length: 423)
Name: NF6423_high_1
Description: NF6423
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF6423_high_1 |
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| [»] scaffold0003 (2 HSPs) |
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Alignment Details
Target: scaffold0003 (Bit Score: 290; Significance: 1e-162; HSPs: 2)
Name: scaffold0003
Description:
Target: scaffold0003; HSP #1
Raw Score: 290; E-Value: 1e-162
Query Start/End: Original strand, 3 - 413
Target Start/End: Complemental strand, 246251 - 245843
Alignment:
| Q |
3 |
atcaatggtgtgtagaagatggaagaccgggaagatgcttgtaaggctattgctctcnnnnnnngcaataatgttattcgatttaatggtgcaagctctg |
102 |
Q |
| |
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||||||||||||| ||||| |||||||||||||||||||||| |||||||||||||| |||||||||||||| |||||||||||||||||||| |
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| T |
246251 |
atcaatggtgtgtggaagaaggaagaccgggaagatgcttgttaggctattgctctccttttttacaataatgttattccatttaatggtgcaagctctg |
246152 |
T |
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| Q |
103 |
atgagtattttaagatgtttaaatatgttgcaaagcatggtataatatttaagtcaccctcttatcacgagattagagttaaatatttggattatttcta |
202 |
Q |
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|||||||||||||||||||| |||||||||||||||||||| ||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||| |
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| T |
246151 |
atgagtattttaagatgtttgaatatgttgcaaagcatggtttaatatttaagccaccctcttatcatgagattagagttaaatatttggattatttcta |
246052 |
T |
|
| Q |
203 |
tggtgaaattagtaaggatttgactggacatagagttgtttgggagaaatatggttgcacaattatgactgatggttggactgataggaggagaagaact |
302 |
Q |
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|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
246051 |
tggtgaaattagtaaggatttgacaggacatagagttgtttgggagaaatatggttgcacaattatgaccgatggttggactgataggaggagaagaact |
245952 |
T |
|
| Q |
303 |
atattgaattttttggtatatagtccaaagggaactttgnnnnnnnnaagtctattgatgcatctgacattaccaaaactgctgataaaatttttaagat |
402 |
Q |
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|||||||| ||||||||| ||||||||||||||||||| ||||||||||| |||||| |||||||||||||| ||||||||||||||||||| |
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| T |
245951 |
atattgaactttttggtacatagtccaaagggaacttt-tttttttaaagtctattga-gcatcttacattaccaaaactcctgataaaatttttaagat |
245854 |
T |
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| Q |
403 |
gattgatgatg |
413 |
Q |
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||||||||||| |
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| T |
245853 |
gattgatgatg |
245843 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0003; HSP #2
Raw Score: 243; E-Value: 1e-134
Query Start/End: Original strand, 3 - 413
Target Start/End: Original strand, 244240 - 244656
Alignment:
| Q |
3 |
atcaatggtgtgtagaagatggaagaccgggaagatgcttgtaaggctattgctctcnnnnnnngcaataatgttattcgatttaatggtgcaagctctg |
102 |
Q |
| |
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||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||| |||||||||||||| |||| ||| |||||| |||| |
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| T |
244240 |
atcaatggtgtgtggaagaaggaagaccgggaagatgcttgtaaggctattgctctctctttttacaataatgttattccatttgatgttgcaaggtctg |
244339 |
T |
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| Q |
103 |
atgagtattttaagatgtttaaatatgttgcaaagcatggtataatatttaagtcac--cctcttatcacgagattagagttaaatatttggattatttc |
200 |
Q |
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|||||||||||||||||||| ||||||||||||||||||||||| ||||||| ||| |||||||||| |||||||||| |||||||||||||||||| |
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| T |
244340 |
atgagtattttaagatgtttgaatatgttgcaaagcatggtataggatttaagccacaccctcttatcatgagattagagctaaatatttggattattta |
244439 |
T |
|
| Q |
201 |
tatggtgaaattagtaaggatttgactggacatagagttgtttgggagaaatatggttgcacaattatgactgatggttggactgataggaggagaagaa |
300 |
Q |
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|||||||||||||||||||||||| | |||||||||| ||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
244440 |
tatggtgaaattagtaaggatttggcaggacatagagctgtttggaagaaatatggttgcacaattatgaccgatggttggactgataggaggagaagaa |
244539 |
T |
|
| Q |
301 |
ctatattgaattttttggtatatagtccaaagggaac---tttgnnnnnnnnaagtctattgatgcatctgacattaccaaaactgctgataaa-atttt |
396 |
Q |
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|||||||||||||||||||| |||||||||||||| | ||| |||||||||||||||||||||||||||||||||||| ||||| |||| |
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| T |
244540 |
ctatattgaattttttggtacatagtccaaagggagcttttttttttttttaaagtctattgatgcatctgacattaccaaaactgctaataaatttttt |
244639 |
T |
|
| Q |
397 |
taagatgattgatgatg |
413 |
Q |
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||||||||||||||||| |
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| T |
244640 |
taagatgattgatgatg |
244656 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 195; Significance: 1e-106; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 195; E-Value: 1e-106
Query Start/End: Original strand, 3 - 413
Target Start/End: Original strand, 15658310 - 15658719
Alignment:
| Q |
3 |
atcaatggtgtgtagaagatggaagaccgggaagatgcttgtaaggctattgctctcnnnnnnng-caataatgttattcgatttaatggtgcaagctct |
101 |
Q |
| |
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||||||||||||| ||||| ||| |||||||| ||||||||||||||||||||||| |||||||| |||| ||||||| |||||| ||| |
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| T |
15658310 |
atcaatggtgtgtggaagaaggagcaccgggaaaatgcttgtaaggctattgctctcttttttttacaataatgctatttcgtttaatgttgcaaggtct |
15658409 |
T |
|
| Q |
102 |
gatgagtattttaagatgtttaaatatgttgcaaagcatggtataatatttaagtcaccctcttatcacgagattagagttaaatatttggattatttct |
201 |
Q |
| |
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||||| ||| ||||||||||| || ||||||||||||||||||| ||||||| ||| ||||||| | ||||||||| |||||||||| ||||||| | |
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| T |
15658410 |
gatgaatatcttaagatgtttgaacttgttgcaaagcatggtataggatttaagccactctcttatgatgagattagaaataaatatttgaattattttt |
15658509 |
T |
|
| Q |
202 |
atggtgaaattagtaaggatttgactggacatagagttgtttgggagaaatatggttgcacaattatgactgatggttggactgataggaggagaagaac |
301 |
Q |
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||||||||||| ||||||||||| | ||| |||| |||||||||||||| |||||||| ||||||||||||||||||||||||||| ||||||||||| |
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| T |
15658510 |
atggtgaaattggtaaggatttggaagcacacagagctgtttgggagaaatgtggttgcataattatgactgatggttggactgatagaaggagaagaac |
15658609 |
T |
|
| Q |
302 |
tatattgaattttttggtatatagtccaaagggaactttgnnnnnnnnaagtctattgatgcatctgacattaccaaaactgctgataaaatttttaaga |
401 |
Q |
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||||||||||||||||||| ||||||||||||||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||| |
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| T |
15658610 |
tatattgaattttttggtacatagtccaaagggaacttt--ttttttaaagtctattgatccatctgacattaccaaaactgctgataaaatttttaaga |
15658707 |
T |
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| Q |
402 |
tgattgatgatg |
413 |
Q |
| |
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|||||||||||| |
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| T |
15658708 |
tgattgatgatg |
15658719 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 350 - 398
Target Start/End: Original strand, 15501581 - 15501629
Alignment:
| Q |
350 |
aagtctattgatgcatctgacattaccaaaactgctgataaaattttta |
398 |
Q |
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|||||||| |||||||| ||||||| ||||||||||||||||| |||| |
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| T |
15501581 |
aagtctatagatgcatcacacattacaaaaactgctgataaaatcttta |
15501629 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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